PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174581.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 353aa MW: 39906.6 Da PI: 5.1823

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	166	210	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + e Er+RR+++ ++++ Lr ++P+ + K++Ka+i + A++YI++L XP_027174581.1 166 NIESERKRRKKLTERLHALRAVVPNiS------KMDKASIIKDAIDYIQEL 210 5689*******************66......**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MPYNLPPRMC MKQPYFMLSL LIPGPYAPGN NIDVYLQPLI AELKELWDVG VTTYDASLKE 60 NFQMHAALLW TISDFPGYAN LSGWSTKGYL TCPVHLSSPS SLAKGERKKE ETMDDIDVVY 120 KYYWENMFLQ TEQLASGVLC RNFDESFSFY DSSSPDGAQS SAASKNIESE RKRRKKLTER 180 LHALRAVVPN ISKMDKASII KDAIDYIQEL HNQERVVQAE ISELESKRSI FLDFDEEISC 240 NSKPKRSRFE QTCDSVGSRS SLIEVLELRV SHIGEKTIVV SLVCSKRTDT IVKICEVFES 300 LNLKIITANI TAFSGRLLNT VFLEANEEEK DVLKIKIQTA IAALNDPDSP MSV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MPYNLPPRMC MKQPYFMLSL LIPGPYAPGN NIDVYLQPLI AELKELWDVG VTTYDASLKE  60
NFQMHAALLW TISDFPGYAN LSGWSTKGYL TCPVHLSSPS SLAKGERKKE ETMDDIDVVY  120
KYYWENMFLQ TEQLASGVLC RNFDESFSFY DSSSPDGAQS SAASKNIESE RKRRKKLTER  180
LHALRAVVPN ISKMDKASII KDAIDYIQEL HNQERVVQAE ISELESKRSI FLDFDEEISC  240
NSKPKRSRFE QTCDSVGSRS SLIEVLELRV SHIGEKTIVV SLVCSKRTDT IVKICEVFES  300
LNLKIITANI TAFSGRLLNT VFLEANEEEK DVLKIKIQTA IAALNDPDSP MSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	177	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	4e-67	bHLH family protein