PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174195.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 315aa    MW: 34339.1 Da    PI: 9.9328
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.2e-10156198148
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                     s+y+GV+++  +grW+A+         k++  ++ +fg++eeAa a++ 
  XP_027174195.1 156 SKYRGVTRYFETGRWFAY---K---AsKKRGQYIRTFGSEEEAAMAYDI 198
                     89****************...5...356799****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MASSSTANGS PLANQSAAAE NSVKNIAPIV ASTQGESSKP SLVRGSTSAY SGVNKAKDDH  60
LYTSYAYVKT RGHSGRYADE EEAARVHDIV TLKCSGAAAK LNFPASHYRD VMRMMRDMDD  120
EELIAHVRRS GSGIARAGSK YHGVTRSSSQ FASAGSKYRG VTRYFETGRW FAYKASKKRG  180
QYIRTFGSEE EAAMAYDIET IKKKGWNAQT NFSLALYDVA GIRAGTANPP ITEEAAKYLQ  240
QATMWSSSGE AQGHSSSGYH SMLHQAQISF VRYSQTLMHI LSAHPNFQTH NVAGSSAQHM  300
FSHSSSSPFK PYVKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.19e-26AP2 family protein