PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174086.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 344aa MW: 38748.2 Da PI: 5.4419

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24.7	5.7e-08	47	84	22	55
AP2 22 pseng....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++n k ++++lg ++ +e Aa a++ a++k++g XP_027174086.1 47 NCWNEsqnkKGRQVYLGAYDDEEAAAHAYDLAALKYWG 84 44422334355*************************98 PP
2	AP2	52.3	1.4e-16	127	178	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027174086.1 127 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 178 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ PHLWDKNCWN ESQNKKGRQV 60 YLGAYDDEEA AAHAYDLAAL KYWGQDTTLN FPLATYQKEL KEMEGQSREE YIGSLRRKSS 120 GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAIAYD MAAIEYRGLN 180 AVTNFDLSRY IKWLRPNATT STTTSAAITE PNPNVDTDLM PTPDPMLASS SIYHPQTEQQ 240 PQPLDITTDI TLNQSRPASA TSALGLLLQS SKFKEMMEMT LAAECPVALT TPESEPTQCS 300 IPDDAQSFFT TPDMGSYIDQ SQEDIFSELI NPFMQPMLQF DFDV

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ PHLWDKNCWN ESQNKKGRQV  60
YLGAYDDEEA AAHAYDLAAL KYWGQDTTLN FPLATYQKEL KEMEGQSREE YIGSLRRKSS  120
GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAIAYD MAAIEYRGLN  180
AVTNFDLSRY IKWLRPNATT STTTSAAITE PNPNVDTDLM PTPDPMLASS SIYHPQTEQQ  240
PQPLDITTDI TLNQSRPASA TSALGLLLQS SKFKEMMEMT LAAECPVALT TPESEPTQCS  300
IPDDAQSFFT TPDMGSYIDQ SQEDIFSELI NPFMQPMLQF DFDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-83	AP2 family protein