PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174023.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 533aa MW: 58169 Da PI: 9.1201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027174023.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	15.5	4.9e-05	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_027174023.1 162 WKCDKCSKKYAVQSDWKAHQKTC 184 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MSNLSGDEGS FSSGEEHQAD KQPQQLQSQS HGSNFAATNT NGSSSQQQQQ QQQPGAKKKR 60 NLPGTPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTT 120 EVRKRVYICP EPTCVHHNPA RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH 180 QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNSMGP NMQGQMPDFM 240 SSMPMNPNAN TSMGLSEFNN FDPKNPLKSL PQDLVPMPFK PTNMVGGMFS SSSGTLFGSP 300 KGISSSCSGL QLSSNTPSSF NYLQEGKNGS QLSGSPHMSA TALLQKAAQM GATASNTINS 360 PMMQKSFVSS MAGPDQIAGP KSSAYSSMQQ HNINNSNNAS YENLTSAMND LGMYSGILLG 420 SDQNLGFIKG MDRRGGGDDS DSPAGLMQSR GSMSRSPAAG PTRMRGGNGN DVTTVDFLGI 480 GVSRPPNVHE QQQRLDQLEA MSQHRMQVMD PFHQQLSHGH GEPAHVEKPL WDV

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MSNLSGDEGS FSSGEEHQAD KQPQQLQSQS HGSNFAATNT NGSSSQQQQQ QQQPGAKKKR  60
NLPGTPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTT  120
EVRKRVYICP EPTCVHHNPA RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH  180
QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNSMGP NMQGQMPDFM  240
SSMPMNPNAN TSMGLSEFNN FDPKNPLKSL PQDLVPMPFK PTNMVGGMFS SSSGTLFGSP  300
KGISSSCSGL QLSSNTPSSF NYLQEGKNGS QLSGSPHMSA TALLQKAAQM GATASNTINS  360
PMMQKSFVSS MAGPDQIAGP KSSAYSSMQQ HNINNSNNAS YENLTSAMND LGMYSGILLG  420
SDQNLGFIKG MDRRGGGDDS DSPAGLMQSR GSMSRSPAAG PTRMRGGNGN DVTTVDFLGI  480
GVSRPPNVHE QQQRLDQLEA MSQHRMQVMD PFHQQLSHGH GEPAHVEKPL WDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-102	C2H2 family protein