PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173557.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HB-PHD
Protein Properties Length: 702aa    MW: 79031 Da    PI: 9.9733
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.43.9e-11484531653
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +f ++ +e L  +F++n  ps++ r  L+++lgL+ ++V  WF+N R+
  XP_027173557.1 484 RFPRHVVEKLRVVFAENELPSRTIRDNLSRQLGLESEKVNKWFKNARY 531
                     6778999***************************************97 PP

2HLH14.75.6e-05649681742
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKae 42 
                     e+E  R  ++++++e+L+++l  +   ps + sKa+
  XP_027173557.1 649 EAEMERLCKMKDKIEKLQQVLLRL---PSSRSSKAD 681
                     7899*******************9...999999996 PP

3PHD38.13.6e-13224278150
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ Ck+
  XP_027173557.1 224 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCRYCKS 278
                     588888854455********56********************9999*******97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MAGETKKRKR KGVSDSSQKE KSPKKQCSKG VKLKPKLQVK SGNSESKHMK KCFDRPGEGK  60
GNISRRKSIV KKAIMQKTKS LKKQSELKTS RKDEPEVKNS KDGGKRDSSD VGLQKVKRRK  120
RRNRRNENLE LDEASRLQRR TRYLLIKVKL EQNLIDAYSA EGWKGHSREK IKPEKELERA  180
KKQILKCKLG IREAICQLDG LSSVGHIEDS AVAPDGSVHH EHIICAKCKL REAFPDNDIV  240
LCDGTCNCAF HQKCLDPPLS TENIPPGDEG WFCRYCKSKM EILEVTNAHL GTNFPLDSNW  300
QDIFKEEAAL LDGKESLLCP EEEWPSDDSE DVDYDPEGRE FHSPNSMSGS GSDSSVDASS  360
SNSLSSIEDD VLLLSERLDK RHMVSEGNIA GVESDEATDC EVLSGPRQRK AVDYIKLHDE  420
MFGKNAVVSE QISEDEDWGP SRRKHRGKES NVESTVVTTG DNPGTSAEVK KKLSSGRSKR  480
PIFRFPRHVV EKLRVVFAEN ELPSRTIRDN LSRQLGLESE KVNKWFKNAR YLALKARKKA  540
KRLNASGPTV SKESVSRSGE DKSADPVTSE NVAIEHELES PGLKSSSRRK TAHLMASAFT  600
RKRHKTALPP TNNKTPADFG DDVCLKLLRE KVKKKKKMNI KRTVMLEAEA EMERLCKMKD  660
KIEKLQQVLL RLPSSRSSKA DAAALNELAI IYVPVAELRE KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611KKRKRK
2629KKRKRKGVSDSSQKEKSPKKQCSK
3636KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
4730KKRKRKGVSDSSQKEKSPKKQCSK
5737KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
6838KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
7117125KRRKRRNRR
8119149KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
9633663KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
10634664KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-137HB-PHD family protein