PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027173557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-PHD | ||||||||
Protein Properties | Length: 702aa MW: 79031 Da PI: 9.9733 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.4 | 3.9e-11 | 484 | 531 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +f ++ +e L +F++n ps++ r L+++lgL+ ++V WF+N R+ XP_027173557.1 484 RFPRHVVEKLRVVFAENELPSRTIRDNLSRQLGLESEKVNKWFKNARY 531 6778999***************************************97 PP | |||||||
2 | HLH | 14.7 | 5.6e-05 | 649 | 681 | 7 | 42 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKae 42 e+E R ++++++e+L+++l + ps + sKa+ XP_027173557.1 649 EAEMERLCKMKDKIEKLQQVLLRL---PSSRSSKAD 681 7899*******************9...999999996 PP | |||||||
3 | PHD | 38.1 | 3.6e-13 | 224 | 278 | 1 | 50 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ Ck+ XP_027173557.1 224 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCRYCKS 278 588888854455********56********************9999*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence |
MAGETKKRKR KGVSDSSQKE KSPKKQCSKG VKLKPKLQVK SGNSESKHMK KCFDRPGEGK 60 GNISRRKSIV KKAIMQKTKS LKKQSELKTS RKDEPEVKNS KDGGKRDSSD VGLQKVKRRK 120 RRNRRNENLE LDEASRLQRR TRYLLIKVKL EQNLIDAYSA EGWKGHSREK IKPEKELERA 180 KKQILKCKLG IREAICQLDG LSSVGHIEDS AVAPDGSVHH EHIICAKCKL REAFPDNDIV 240 LCDGTCNCAF HQKCLDPPLS TENIPPGDEG WFCRYCKSKM EILEVTNAHL GTNFPLDSNW 300 QDIFKEEAAL LDGKESLLCP EEEWPSDDSE DVDYDPEGRE FHSPNSMSGS GSDSSVDASS 360 SNSLSSIEDD VLLLSERLDK RHMVSEGNIA GVESDEATDC EVLSGPRQRK AVDYIKLHDE 420 MFGKNAVVSE QISEDEDWGP SRRKHRGKES NVESTVVTTG DNPGTSAEVK KKLSSGRSKR 480 PIFRFPRHVV EKLRVVFAEN ELPSRTIRDN LSRQLGLESE KVNKWFKNAR YLALKARKKA 540 KRLNASGPTV SKESVSRSGE DKSADPVTSE NVAIEHELES PGLKSSSRRK TAHLMASAFT 600 RKRHKTALPP TNNKTPADFG DDVCLKLLRE KVKKKKKMNI KRTVMLEAEA EMERLCKMKD 660 KIEKLQQVLL RLPSSRSSKA DAAALNELAI IYVPVAELRE KR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 11 | KKRKRK |
2 | 6 | 29 | KKRKRKGVSDSSQKEKSPKKQCSK |
3 | 6 | 36 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
4 | 7 | 30 | KKRKRKGVSDSSQKEKSPKKQCSK |
5 | 7 | 37 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
6 | 8 | 38 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
7 | 117 | 125 | KRRKRRNRR |
8 | 119 | 149 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
9 | 633 | 663 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
10 | 634 | 664 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-137 | HB-PHD family protein |