PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173482.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 412aa MW: 45489.9 Da PI: 9.0268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.5e-07	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_027173482.1 240 HYCQVCGKGFKRDANLRMHMRAH 262 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MHNSPRMIIQ GSSNSCFRSG PQGISIYGVS DQDVVSSSSI QAATSAPDTH SSSFLYNLSI 60 LKDKVHQVQS LASTFISSDH NQPPESTPIA VASMGTLIQE IIITASSMMF ACQQVSLGAG 120 GPSGNNNRTS SNELYHHHHS QSHGHGHGHG HHHQRQGFYA NDALDNWYGD SYNTNNCSTN 180 YTNTRTSSVT VSNHNNEVGV GRRELLSQKG EASGELEKLS PKSYDIVELD AADLLAKYTH 240 YCQVCGKGFK RDANLRMHMR AHGDEYKSTA ALSNPLKNNL GANGKDQEGL PKLPRKYSCP 300 HEGCRWNKKH AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC SRKQFSVLSD LRTHEKHCGD 360 LKWQCSCGTT FSRKDKLMGH VALFVGHTPA ISSLAKMGKA DQNAAQMQLD DR

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MHNSPRMIIQ GSSNSCFRSG PQGISIYGVS DQDVVSSSSI QAATSAPDTH SSSFLYNLSI  60
LKDKVHQVQS LASTFISSDH NQPPESTPIA VASMGTLIQE IIITASSMMF ACQQVSLGAG  120
GPSGNNNRTS SNELYHHHHS QSHGHGHGHG HHHQRQGFYA NDALDNWYGD SYNTNNCSTN  180
YTNTRTSSVT VSNHNNEVGV GRRELLSQKG EASGELEKLS PKSYDIVELD AADLLAKYTH  240
YCQVCGKGFK RDANLRMHMR AHGDEYKSTA ALSNPLKNNL GANGKDQEGL PKLPRKYSCP  300
HEGCRWNKKH AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC SRKQFSVLSD LRTHEKHCGD  360
LKWQCSCGTT FSRKDKLMGH VALFVGHTPA ISSLAKMGKA DQNAAQMQLD DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	4e-91	C2H2 family protein