PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173454.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 386aa MW: 43303.2 Da PI: 6.7246

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.6	2.2e-32	112	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+ XP_027173454.1 112 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsggggggnndsGGE--KGLLLSFEDESGKGWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVL 204 99*****************************9988875444..6779****************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F++++ ++ +l+++++++ XP_027173454.1 205 FERHRLDGDRLFIGWRKR 222 755599999***9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MSINHFSSDL PETHYWWPQQ QHHYHHTMEP SSAKTPPSRP NTTTAAAFWP NSHLYRPISA 60 HNPHNSAAFS FDLNNEEEDE APAIEDERES NARIISAKQE EDKEIVPKEP LFEKPLTPSD 120 VGKLNRLVIP KQHAEKYFPL SGGGGGGNND SGGEKGLLLS FEDESGKGWR FRYSYWNSSQ 180 SYVLTKGWSR FVKEKRLDAG DVVLFERHRL DGDRLFIGWR KRRAGGPSQG GQEGTGAAQA 240 QPATSGGGGG GWTRVYFPSG HHPYPQQLQQ YHHDDGHGPA VPYQPDCLRP AAGVLQNQTT 300 AAASANSKRL RLFGVNLECQ QQPDHDSETS SEPPTTPEAS STWTQDQAHY QFHSYNPRLH 360 HSYFNHHNHM DINFSGDMNQ TGYRQG

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MSINHFSSDL PETHYWWPQQ QHHYHHTMEP SSAKTPPSRP NTTTAAAFWP NSHLYRPISA  60
HNPHNSAAFS FDLNNEEEDE APAIEDERES NARIISAKQE EDKEIVPKEP LFEKPLTPSD  120
VGKLNRLVIP KQHAEKYFPL SGGGGGGNND SGGEKGLLLS FEDESGKGWR FRYSYWNSSQ  180
SYVLTKGWSR FVKEKRLDAG DVVLFERHRL DGDRLFIGWR KRRAGGPSQG GQEGTGAAQA  240
QPATSGGGGG GWTRVYFPSG HHPYPQQLQQ YHHDDGHGPA VPYQPDCLRP AAGVLQNQTT  300
AAASANSKRL RLFGVNLECQ QQPDHDSETS SEPPTTPEAS STWTQDQAHY QFHSYNPRLH  360
HSYFNHHNHM DINFSGDMNQ TGYRQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	1e-58	B3 family protein