PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173265.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 350aa    MW: 39300.2 Da    PI: 8.3188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_027173265.1 73 YTCSFCRREFKSAQALGGHMNVH 95
                    9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MPEAGRFELG SYIFLMEQAR YWMWTKRKHD FGSHVFSASL PNPSSYGESW EEQAFAEDAA  60
GGLGGCTWPP RSYTCSFCRR EFKSAQALGG HMNVHRRDRA RLKQSPTPHM EVLSRNHQIL  120
NPCASLDSPQ ICTFLYSHDS NDSDHRVVLA SPSSPIRVSS SSPPPKIMDC EEKILGAPQF  180
FSTIVDESYQ KSNLSSPQSW SNLVADKYFH VPDSKNGDKG SKTVKSNGRA NGEHVKADLS  240
ASLNLLLCRT RSNTSDDAEN FHTYKRRKMD ETSVTLLPTS TLADKKCLLQ SNLPPKMSPN  300
SIDELDLELR LGDPPKCLNS SAITMLIPVK GHRYAYTYLR NRQISYLQVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27C2H2 family protein