PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173151.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 527aa    MW: 60067 Da    PI: 6.7464
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88e-3072157187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_027173151.1  72 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 157
                     8*************************************999*****************************98..55667*******85 PP

2trihelix57.43.8e-18373445277
        trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                     W + e+ +Li++r++me r+++ g+ ++ lWee+++km+  g+ r+p +Ck+kw++++ +  k+ + +k+     s+
  XP_027173151.1 373 WAECEITKLIQLRTNMEPRFQQiGCPEEILWEEIAAKMACVGYDRTPLMCKDKWDSVSSYLMKCSKKRKES----SR 445
                     *********************879****************************************9998873....44 PP

Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MEEHQYGMAD LRQYMNGSRP LFAPIPPPPP DLLSGHRTLT VVPTQQHYHE MVMGLEMEAG  60
CGLGGGDGGT GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMS EEHGYQRSGK  120
KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG DTSNAASVSE NHLLGNSVRY  180
NAAANNTTSV SNQEASFQAQ KLSDSLSLSN SSDFDTTSSE DSDLQATVDN DSNEKRKKRS  240
KGKRSWKAKI KDFIDSQMTK LMKKQEAWLE NMMKTIEQKE QERMLREEDW RKQEAARVER  300
EHRFWANERT WIESRDAAMM EALQKLTGKE LVKASTTPDD QELMAAHGLQ SMNKHHNDNG  360
SETIPSFLKG DSWAECEITK LIQLRTNMEP RFQQIGCPEE ILWEEIAAKM ACVGYDRTPL  420
MCKDKWDSVS SYLMKCSKKR KESSRFCCYL NNDSITGQGG NYSCDTNDDQ GGPDQTVRHA  480
PQNDQGASPP NGDTGHGMHD GCYRYLMGDA ENLWENYGAK FSKGVNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238244KRSKGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.19e-59Trihelix family protein