PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027173151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 527aa MW: 60067 Da PI: 6.7464 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.8 | 8e-30 | 72 | 157 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_027173151.1 72 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 157 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 57.4 | 3.8e-18 | 373 | 445 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 W + e+ +Li++r++me r+++ g+ ++ lWee+++km+ g+ r+p +Ck+kw++++ + k+ + +k+ s+ XP_027173151.1 373 WAECEITKLIQLRTNMEPRFQQiGCPEEILWEEIAAKMACVGYDRTPLMCKDKWDSVSSYLMKCSKKRKES----SR 445 *********************879****************************************9998873....44 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence |
MEEHQYGMAD LRQYMNGSRP LFAPIPPPPP DLLSGHRTLT VVPTQQHYHE MVMGLEMEAG 60 CGLGGGDGGT GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMS EEHGYQRSGK 120 KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG DTSNAASVSE NHLLGNSVRY 180 NAAANNTTSV SNQEASFQAQ KLSDSLSLSN SSDFDTTSSE DSDLQATVDN DSNEKRKKRS 240 KGKRSWKAKI KDFIDSQMTK LMKKQEAWLE NMMKTIEQKE QERMLREEDW RKQEAARVER 300 EHRFWANERT WIESRDAAMM EALQKLTGKE LVKASTTPDD QELMAAHGLQ SMNKHHNDNG 360 SETIPSFLKG DSWAECEITK LIQLRTNMEP RFQQIGCPEE ILWEEIAAKM ACVGYDRTPL 420 MCKDKWDSVS SYLMKCSKKR KESSRFCCYL NNDSITGQGG NYSCDTNDDQ GGPDQTVRHA 480 PQNDQGASPP NGDTGHGMHD GCYRYLMGDA ENLWENYGAK FSKGVNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 244 | KRSKGKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 9e-59 | Trihelix family protein |