PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173131.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 354aa MW: 38702 Da PI: 6.4162

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.2	1.2e-27	102	184	2	71
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_027173131.1 102 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnntisspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 184 689******...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MVNNNQEDGE RNHSALSRGG NGGGGGATRS WGTTVSGQSV STSGSVGSPS SRSEAAMATP 60 ASEGTFLKLN NLDIQGDDAG SQGTAGNRKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK 120 GRTTYNEVAD ELVAEFADPN NTISSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI 180 QWKGLPRTSL NDIEELKNER LGLRNRIEKK AAYLEELEEQ YVGLQNLIQR NEQLYGSGNA 240 PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCERPQS 300 DNVPQNVSAD GGESSMANVF QPQVHQPSIP SIPARPPTSP PLPGILKARV KHEH

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MVNNNQEDGE RNHSALSRGG NGGGGGATRS WGTTVSGQSV STSGSVGSPS SRSEAAMATP  60
ASEGTFLKLN NLDIQGDDAG SQGTAGNRKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFADPN NTISSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTSL NDIEELKNER LGLRNRIEKK AAYLEELEEQ YVGLQNLIQR NEQLYGSGNA  240
PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCERPQS  300
DNVPQNVSAD GGESSMANVF QPQVHQPSIP SIPARPPTSP PLPGILKARV KHEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-146	E2F/DP family protein