PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173115.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 352aa MW: 38431.7 Da PI: 6.1902

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.2	1.2e-27	100	182	2	71
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_027173115.1 100 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnntisspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 182 689******...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MVNNNQEDGE RNHSALSRGG NGGGGGATRS WGTTVSGQSV STSGSVGSPS SRSEAAMATP 60 ASEGTFLKLN NLDIQGDDAG SQGTAGKKKR GQRAVGGDKS GRGLRQFSMK VCEKVESKGR 120 TTYNEVADEL VAEFADPNNT ISSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW 180 KGLPRTSLND IEELKNERLG LRNRIEKKAA YLEELEEQYV GLQNLIQRNE QLYGSGNAPS 240 GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERPQSDN 300 VPQNVSADGG ESSMANVFQP QVHQPSIPSI PARPPTSPPL PGILKARVKH EH

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MVNNNQEDGE RNHSALSRGG NGGGGGATRS WGTTVSGQSV STSGSVGSPS SRSEAAMATP  60
ASEGTFLKLN NLDIQGDDAG SQGTAGKKKR GQRAVGGDKS GRGLRQFSMK VCEKVESKGR  120
TTYNEVADEL VAEFADPNNT ISSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW  180
KGLPRTSLND IEELKNERLG LRNRIEKKAA YLEELEEQYV GLQNLIQRNE QLYGSGNAPS  240
GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERPQSDN  300
VPQNVSADGG ESSMANVFQP QVHQPSIPSI PARPPTSPPL PGILKARVKH EH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-144	E2F/DP family protein