PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173087.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 526aa    MW: 58911.1 Da    PI: 4.5025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS149.24e-461685251373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l +lL++  eav++g++ela+ ++ r+ e+  p g++++Rla+ + +  +++ +            +++s   +++  aa+k+f++ +P+ +f+h
  XP_027173087.1 168 LHHLLTALGEAVENGHQELAEVIVRRITERIDPLGEALERLAFNLFQSAENQGSY----------LRQQS---TKNFEAAFKAFYQWFPYGRFAH 249
                     5799**************************************9888776666554..........33333...56777899************** PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taN+aIlea+ ++ e++Hi+Dfd+++G+QWp+L+++++ +     slR+T + s   +s    eet++rL + A++lg++++ + +   +ledl
  XP_027173087.1 250 FTANSAILEAMPSDaETIHIVDFDMGEGIQWPPLMDSISRK---GKSLRLTSIIS--GDSCWVFEETRQRLYDHARSLGLSLNVEEM---ALEDL 336
                     ***********98889**********************986...458********..45999********************99997...88999 PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsl 271
                       e+ r+k+    +E la nl+++l ++   + + +s+  e+L l k+l         ++++ + e   +  n +++   f + + +y alf+s+
  XP_027173087.1 337 VAEMKRTKKkggaREWLAFNLMVALPHMG--RRADRSRVVEFLTLAKDLlvysagDKGIITIGDGEagGNFaNCPEYSSFFNSHFTHYQALFESM 429
                     88888888888889**************8..445555689*******995554433579***9999333446777999***************** PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve...eesgslv 359
                     e ++p    e+ri +E  +l++ +++            h  +++W+++ ++   +G+   ++s +   +ak ++++ k   y+v+   e+++++v
  XP_027173087.1 430 ECNFPVYLaEARIAMESLFLAPYVSS------------HSWFQHWQDARGSqplCGLDGRRMSRDCLIEAKEIVNEQKAS-YKVNfqkENENEIV 511
                     *****87669********99988764............55577887766544559**********************954.888766677999** PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     l W++ p+v vS+W
  XP_027173087.1 512 LEWRGIPIVRVSSW 525
                     ************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MGSQLLQPSW PLYSTVSLDH AGLHSFPMDI CIDEPHDFSS SFATEKSSGI SFDSYFAAVT  60
SPDSLVEFLI FDDEKRGGDT MAHIMDGLEP ISSSGAIEED CQWLEESDNG EDYISSQLTP  120
EADAWSACPP MEQSKPGSAS TMNATPSENM SLTFPPVNNM GTDTQLGLHH LLTALGEAVE  180
NGHQELAEVI VRRITERIDP LGEALERLAF NLFQSAENQG SYLRQQSTKN FEAAFKAFYQ  240
WFPYGRFAHF TANSAILEAM PSDAETIHIV DFDMGEGIQW PPLMDSISRK GKSLRLTSII  300
SGDSCWVFEE TRQRLYDHAR SLGLSLNVEE MALEDLVAEM KRTKKKGGAR EWLAFNLMVA  360
LPHMGRRADR SRVVEFLTLA KDLLVYSAGD KGIITIGDGE AGGNFANCPE YSSFFNSHFT  420
HYQALFESME CNFPVYLAEA RIAMESLFLA PYVSSHSWFQ HWQDARGSQP LCGLDGRRMS  480
RDCLIEAKEI VNEQKASYKV NFQKENENEI VLEWRGIPIV RVSSWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-22GRAS family protein