PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027172970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 20833.6 Da PI: 8.4852 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54 | 2.9e-17 | 16 | 69 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + +++++q++ L + F +n+++ e++ +LA++lg++ rq+ +W+qN+Ra++k+ XP_027172970.1 16 KKRLSQDQVRLLDANFSSNKKLEPERKLQLARQLGVPPRQIAIWYQNKRARWKN 69 56799***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 104.3 | 9.8e-34 | 16 | 106 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rls++qv+lL+ +F++++kLeperK +lar+Lg+ prq+a+W+qn+RAR+k++ lE dy aL+ ++++ +e+++Lekev +L+ el++ XP_027172970.1 16 KKRLSQDQVRLLDANFSSNKKLEPERKLQLARQLGVPPRQIAIWYQNKRARWKNQSLELDYGALQLRLETALAEKRQLEKEVGQLQIELQK 106 99************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MSSAQNLKGH SLKHCKKRLS QDQVRLLDAN FSSNKKLEPE RKLQLARQLG VPPRQIAIWY 60 QNKRARWKNQ SLELDYGALQ LRLETALAEK RQLEKEVGQL QIELQKTREN LLACTKQAQE 120 ILPFSSFSSC GDEGGGSSSL SLHEDVSCSW QDGRQGLQLE ELYACLMGSE GSASGSVGQN 180 EKVFLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 6e-34 | HD-ZIP family protein |