PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172954.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 574aa MW: 60606.9 Da PI: 6.7586

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.8	2.8e-06	14	75	7	55
--HHHHHHHHHHHH...HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFe...knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f++ ++ e+e+ + ++ ps+e LA+k ++ +qV +WFqNrR+ XP_027172954.1 14 FNPAEVAEMEAILQahnNTAVPSREILLALAEKFsnspersgkvVVQMKQVWNWFQNRRYAL 75 6777777777766643357789999999999999999999999999*************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN NTAVPSREIL LALAEKFSNS PERSGKVVVQ 60 MKQVWNWFQN RRYALRAKAT KVPAKVGPSP VPRDDLAAAR NVPQAPQHIS VPPAIVRNVP 120 QVSQPVSAPS VQSAGKNGSD NSQMEFEAKS ARDGAWYDVA TFISHRSVET SDPEVLVRFA 180 GFGPEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR 240 RHDVRGCRCR FLVRYDHDQT EQEIVPLRKV CRRPETDYRL QQLHAESANW NQNKAGSEPH 300 TGNTLKVSLP AEATQKQHKA EAPAEVKEQQ HNNEGRANTG PAATPISVDN LSTTTAAVSH 360 AHANITSAAV FAPVAHVTAP VVTTTAPIAQ SNVPGATMSV ANNTSPVSHS SVSKATVSTD 420 KATAPVTYSN VSGASVSTTT PVANSSVSGS SSSGMSTTVP VDNSDDSRAT ISTAAPVATS 480 HVSGATSSVV TTTTLRDNNS NFSGAPGVAP IGHSGVLPDT EPKGLPENVS GACASNSVEN 540 TSTPQATIAV TSSTTDTATT GTVEGSSDEN TLQG

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MGRPPSNGGP SFRFNPAEVA EMEAILQAHN NTAVPSREIL LALAEKFSNS PERSGKVVVQ  60
MKQVWNWFQN RRYALRAKAT KVPAKVGPSP VPRDDLAAAR NVPQAPQHIS VPPAIVRNVP  120
QVSQPVSAPS VQSAGKNGSD NSQMEFEAKS ARDGAWYDVA TFISHRSVET SDPEVLVRFA  180
GFGPEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR  240
RHDVRGCRCR FLVRYDHDQT EQEIVPLRKV CRRPETDYRL QQLHAESANW NQNKAGSEPH  300
TGNTLKVSLP AEATQKQHKA EAPAEVKEQQ HNNEGRANTG PAATPISVDN LSTTTAAVSH  360
AHANITSAAV FAPVAHVTAP VVTTTAPIAQ SNVPGATMSV ANNTSPVSHS SVSKATVSTD  420
KATAPVTYSN VSGASVSTTT PVANSSVSGS SSSGMSTTVP VDNSDDSRAT ISTAAPVATS  480
HVSGATSSVV TTTTLRDNNS NFSGAPGVAP IGHSGVLPDT EPKGLPENVS GACASNSVEN  540
TSTPQATIAV TSSTTDTATT GTVEGSSDEN TLQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.2	1e-128	HB-other family protein