PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172953.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 605aa MW: 63662.1 Da PI: 6.3667

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.7	3e-06	14	75	7	55
--HHHHHHHHHHHH...HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFe...knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f++ ++ e+e+ + ++ ps+e LA+k ++ +qV +WFqNrR+ XP_027172953.1 14 FNPAEVAEMEAILQahnNTAVPSREILLALAEKFsnspersgkvVVQMKQVWNWFQNRRYAL 75 6777777777766643357789999999999999999999999999*************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN NTAVPSREIL LALAEKFSNS PERSGKVVVQ 60 MKQVWNWFQN RRYALRAKAT KVPAKVGPSP VPRDDLAAAR NVPQAPQHIS VPPAIVRNVP 120 QVSQPVSAPS VQSAGKNGSD NSQMEFEAKS ARDGAWYDVA TFISHRSVET SDPEVLVRFA 180 GFGPEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR 240 RHDVRGCRCR FLVRYDHDQT EEIVPLRKVC RRPETDYRLQ QLHAESANWN QNKAGSEPHT 300 GNTLKVSLPA EATQKQHKAE APAEVKEQQH NNEGRANTGP AATPISVDNL STTTAAVSHA 360 HANITSAAVF APVAHVTAPV VTTTAPIAQS NVPGATMSVA NNTSPVSHSS VSKATVSTDK 420 ATAPVTYSNV SGASVSTTTP VANSSVSGSS SSGMSTTVPV DNSDDSRATI STAAPVATSH 480 VSGATSSVVT TTTLRDNSNV FGANTMDSAT NSNDTVDANP VTSTTSPIAD SNFSGAPGVA 540 PIGHSGVLPD TEPKGLPENV SGACASNSVE NTSTPQATIA VTSSTTDTAT TGTVEGSSDE 600 NTLQG

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MGRPPSNGGP SFRFNPAEVA EMEAILQAHN NTAVPSREIL LALAEKFSNS PERSGKVVVQ  60
MKQVWNWFQN RRYALRAKAT KVPAKVGPSP VPRDDLAAAR NVPQAPQHIS VPPAIVRNVP  120
QVSQPVSAPS VQSAGKNGSD NSQMEFEAKS ARDGAWYDVA TFISHRSVET SDPEVLVRFA  180
GFGPEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR  240
RHDVRGCRCR FLVRYDHDQT EEIVPLRKVC RRPETDYRLQ QLHAESANWN QNKAGSEPHT  300
GNTLKVSLPA EATQKQHKAE APAEVKEQQH NNEGRANTGP AATPISVDNL STTTAAVSHA  360
HANITSAAVF APVAHVTAPV VTTTAPIAQS NVPGATMSVA NNTSPVSHSS VSKATVSTDK  420
ATAPVTYSNV SGASVSTTTP VANSSVSGSS SSGMSTTVPV DNSDDSRATI STAAPVATSH  480
VSGATSSVVT TTTLRDNSNV FGANTMDSAT NSNDTVDANP VTSTTSPIAD SNFSGAPGVA  540
PIGHSGVLPD TEPKGLPENV SGACASNSVE NTSTPQATIA VTSSTTDTAT TGTVEGSSDE  600
NTLQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-127	HB-other family protein