PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027172804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | DBB | ||||||||
Protein Properties | Length: 296aa MW: 32038.8 Da PI: 6.083 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.5 | 8.7e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl XP_027172804.1 4 QCNVCEVAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7*****999*********************66899999999986 PP | |||||||
2 | zf-B_box | 30 | 1.1e-09 | 52 | 94 | 1 | 37 |
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C +++H H XP_027172804.1 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTAntyvstH 94 689*********9*********************654444444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MKIQCNVCEV AEASVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS SSQMPKCDIC 60 QETVGYFFCL EDRALLCRKC DVAIHTANTY VSTHQRFLLT GVKVGLEPAE PGSSSLSGNS 120 HSGEKISEPE LRPSRRPAPV SSSSQYNKVL PTQVNGVGDF VPTKTRLTGG SAAGSIPQWQ 180 FDEFLGLNDF NQSYNYIDNG SSKADSGKLG GSDCSSILRA ADEELDGDDC LGQVPEASWA 240 VPQIPSPPTA SGLYWQKAYQ NPPDTAVFVP DISGSPMQNL YNHQSHGSTF KRRKHF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-98 | DBB family protein |