PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172547.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 470aa MW: 51359.7 Da PI: 8.8863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	55	75	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_027172547.1 55 CEICGKGFQRDQNLQLHRRGH 75 *******************88 PP
2	zf-C2H2	13.5	0.00022	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_027172547.1 129 WKCEKCSKRYAVQSDWKAHSKTC 151 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MTEEVISSGF IQTPIGEANP PPLKKKRNLP GTPDPEAEVI ALSPKTLMAT NRFLCEICGK 60 GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEKS CVHHHPSRAL GDLTGIKKHF 120 CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL 180 AEETARVTAA SNVVAANSIN YHFVGASLGP GMGQHFASMF KPISTNNETP ANPIRQGLSL 240 WMGAHGLSQT QESIGNNNLQ EIHHQLNPAV SSSGLVFTTD PFVSVPCSNP PPINYPLNWD 300 FGNKPSSNSS EELTNNSSSL PLSNVAKDGG SQVISVPSLF STQHQSHQTH STANMSATAL 360 LQKAAQMGAT TTDPSFLGSF GLKCNDSQIQ DGNRYCSPYG GTATSVATAL QSSVTDHLST 420 LNELQMYPSK RRHIQVDQDS TPTTGGGQTR DFLGVGIQSI CHPSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MTEEVISSGF IQTPIGEANP PPLKKKRNLP GTPDPEAEVI ALSPKTLMAT NRFLCEICGK  60
GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEKS CVHHHPSRAL GDLTGIKKHF  120
CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL  180
AEETARVTAA SNVVAANSIN YHFVGASLGP GMGQHFASMF KPISTNNETP ANPIRQGLSL  240
WMGAHGLSQT QESIGNNNLQ EIHHQLNPAV SSSGLVFTTD PFVSVPCSNP PPINYPLNWD  300
FGNKPSSNSS EELTNNSSSL PLSNVAKDGG SQVISVPSLF STQHQSHQTH STANMSATAL  360
LQKAAQMGAT TTDPSFLGSF GLKCNDSQIQ DGNRYCSPYG GTATSVATAL QSSVTDHLST  420
LNELQMYPSK RRHIQVDQDS TPTTGGGQTR DFLGVGIQSI CHPSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-141	C2H2 family protein