PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172247.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 418aa MW: 46587.6 Da PI: 8.8666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	70	91	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ykC+ C k+F++ s++k+H+++ XP_027172247.1 70 YKCSTCRKTFRTESSFKKHQKS 91 9*******************85 PP
2	zf-C2H2	15.7	4.1e-05	306	326	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 +kC+ C+ksF+++ L Hir XP_027172247.1 306 HKCSFCNKSFKTSQALSGHIR 326 79*****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAELVITLNV AKREGDEMVR NPYTCLACNK SFSNGQAFGG HKRIHSLKKK EKKPIEVIIL 60 DFSRENPWYY KCSTCRKTFR TESSFKKHQK SSFKEHQKTH LKRKKPKGTV EPSITASYTR 120 PLSTTSSDVI LVQDDPVKLE NGEEHRLSDM SKFLTPGWSK TGKRSLVAGG LAQISTPEDV 180 HQVANDLIVL SYGEARAEDL PLKKRKIELP PFEEMDYQHE ETVLDHMRKG KGQGFVANSS 240 GDIREVISGD FICQKCNRSF PTYQALGGHN SHHKRAAKKE SRVRFPKSNG SSSSNLAERA 300 SARWPHKCSF CNKSFKTSQA LSGHIRHKAP VPPAAVPLVE VAVEEIIEEA IVQVPKRAHL 360 FDLNELPPPE DGDGIDDEDM VQPENSTPRL SWHEGVGDPG SSSTPSRGGE LENNGANI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAELVITLNV AKREGDEMVR NPYTCLACNK SFSNGQAFGG HKRIHSLKKK EKKPIEVIIL  60
DFSRENPWYY KCSTCRKTFR TESSFKKHQK SSFKEHQKTH LKRKKPKGTV EPSITASYTR  120
PLSTTSSDVI LVQDDPVKLE NGEEHRLSDM SKFLTPGWSK TGKRSLVAGG LAQISTPEDV  180
HQVANDLIVL SYGEARAEDL PLKKRKIELP PFEEMDYQHE ETVLDHMRKG KGQGFVANSS  240
GDIREVISGD FICQKCNRSF PTYQALGGHN SHHKRAAKKE SRVRFPKSNG SSSSNLAERA  300
SARWPHKCSF CNKSFKTSQA LSGHIRHKAP VPPAAVPLVE VAVEEIIEEA IVQVPKRAHL  360
FDLNELPPPE DGDGIDDEDM VQPENSTPRL SWHEGVGDPG SSSTPSRGGE LENNGANI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	90	KKEKKPIEVIILDFSRENPWYYKCSTCRKTFRTESSFKKHQK
2	203	231	KKRKIELPPFEEMDYQHEETVLDHMRKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-11	C2H2 family protein