PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171220.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17827.7 Da    PI: 10.3801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.9e-11347549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k n +  fskRrn ++ KA+ L++L +ae a+++fs+  k y +
  XP_027171220.1  3 KKNNLHDNFSKRRNDLFMKASKLCTLNGAELALLVFSPGKKAYAF 47
                    56667778******************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MEKKNNLHDN FSKRRNDLFM KASKLCTLNG AELALLVFSP GKKAYAFGHS SFESVIDKFL  60
GNKPSPSIHG GTDHHVVANH HGDNISELNK FIDLKKQLKA NKKREEVLVQ MIQEGQRKNW  120
WQAPIEEMNL EQLLKLEKAL KGLKKKIQDE LKRQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-27M-type_MADS family protein