PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171108.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 585aa    MW: 65292.7 Da    PI: 6.3123
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4255.9e-1302155841373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ecA+a+ +++le+ ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y++l+++e +    ++ l+++++++e++P+lkf++
  XP_027171108.1 215 LKQLLMECARAFYENELENFEKLVETARGAVSITGEPIQRLGAYMLEGLIARKEASGTNIYRTLRCKEPE---GKDLLSYMHILYEICPYLKFGY 306
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + e l ++g+rLa + e++++p+ef++ v     +
  XP_027171108.1 307 MAANGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGEGLAAVGKRLAAISEKFNIPVEFHA-VPVFAPE 400
                     *******************************************************999999**************************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L ++pgEalaVn+ lqlh+++desv+++++rd +L++vk l+Pkvv++veqe+++n+++Fl rf e+leyysa+f+s+++++pr+ +eri
  XP_027171108.1 401 VTRDMLCIRPGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKALNPKVVTLVEQESKTNTAPFLPRFWETLEYYSAIFESIDVTMPRDRKERI 495
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+L+s+SaW
  XP_027171108.1 496 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEADGAMLLGWKDRNLISASAW 584
                     **********************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    
MDSHQFFGYS VAGADISYPS YSTAPSVPNR LYGSLKFELR NSPNSPFLSH FDSETLTTQS  60
DGQEQHSSTE NLSEASPSCN SSLNYTSSCY QQLSSSPDSS QEKPQISSGG TTLFQNPNNG  120
HNIKYTLQQL ETALMGPDEE ATTSAPSVGE NKRPQASGQK SRAWSQENQP LGSQLIHSQP  180
SYALHLGKSG NELPMEKRLR AIEELSLKGI PPTNLKQLLM ECARAFYENE LENFEKLVET  240
ARGAVSITGE PIQRLGAYML EGLIARKEAS GTNIYRTLRC KEPEGKDLLS YMHILYEICP  300
YLKFGYMAAN GAIAEACRNE DRIHIVDFQI AQGTQWMTLL QALAARPSGA PHVRITGIDD  360
PVSQYARGEG LAAVGKRLAA ISEKFNIPVE FHAVPVFAPE VTRDMLCIRP GEALAVNFPL  420
QLHHTPDESV DVTNPRDGLL RMVKALNPKV VTLVEQESKT NTAPFLPRFW ETLEYYSAIF  480
ESIDVTMPRD RKERINVEQH CLARDIVNII ACEGKERVER HELFGKWKSR FTMAGFRQYP  540
LSSYVNSVIR GLLRCYSEHY TLVEADGAML LGWKDRNLIS ASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-176GRAS family protein