PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027170610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26188 Da PI: 8.5042 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.8e-20 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g XP_027170610.1 33 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 81 8*******.**********883....5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MRRGRAAAAA KQAAAAAAAG ETNGSGGSKE IRFRGVRKRP WGRFAAEIRD PWKKTRVWLG 60 TFDSAEDAAR AYDAAARTLR GPKAKTNFPL PSTSSYHHPH QFSNYQNPNN PNFNNNDPAM 120 FIDHPQNRLY HPEPHQILHP QRPTSSSLSS TVESFSGPRP QTTAAAATSM IPSSSRRHPR 180 SPPVVPDDCH SDCDSSSSVI DDGDCDIASS SIRKPPLPFD LNLPAPVDVD ADDLHCTALC 240 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 8e-32 | ERF family protein |