PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170570.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31212.9 Da    PI: 9.3574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.4e-191865350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    i+++   qvtfskRr+g++KKA EL++L++ +v +++fs+  k y++ 
  XP_027170570.1 18 IQDEQSLQVTFSKRRAGLFKKACELCTLTGSQVGLVVFSPGEKAYTFG 65
                    7888899***************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MALVKKTKGR QKIDLVKIQD EQSLQVTFSK RRAGLFKKAC ELCTLTGSQV GLVVFSPGEK  60
AYTFGSPSID FVIEMFESKS PKPVDTSTLL LEAHHKLGVR HLNNELTILE NELEAKKKIG  120
ENLDQLRKVG QICHWWEAPI NDLNLEQLEN LHAALVELQK SVKSELKKPM YENANQNPNL  180
KGINPYGIGL LGIDAKENVH GVLDLLQSKP PRTMTFPPIV ATSKPNTGIS IRDWPVASTA  240
ENRPTTSPTF NPNASEFGGS IVTPHPSQGF KNSYGGFPMF KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40M-type_MADS family protein