PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027170318.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 345aa MW: 38377.3 Da PI: 7.3718

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027170318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.3	3.9e-36	25	128	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaes 77 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + ++ XP_027170318.1 25 ATGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELphnhpneislmaapstdsN--------PG- 110 589**************************************************************5444444444333322211........11. PP TCP 78 ssssasnsssg...............k 89 s + XP_027170318.1 111 -------S--SsgcqgfehrsessslY 128 .......1..11233333222112220 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SSSGCQGFEH 120 RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD 180 RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMFPGTNYQ QKTESWSGAG 240 EGENRNIGFI FNPHSMPVPQ QLIFSQNSAF SQREPLQSNY SHLFHAWNER QMPSVDHHNA 300 QAISQSSMYN IHFGSDFQVP ARIRGDEEPG VVSLQPSSVS PSSQH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SSSGCQGFEH  120
RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD  180
RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMFPGTNYQ QKTESWSGAG  240
EGENRNIGFI FNPHSMPVPQ QLIFSQNSAF SQREPLQSNY SHLFHAWNER QMPSVDHHNA  300
QAISQSSMYN IHFGSDFQVP ARIRGDEEPG VVSLQPSSVS PSSQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	5e-55	TCP family protein