PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 403aa    MW: 43606.9 Da    PI: 10.0986
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.99.4e-17105195186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Liea  +   +l+rg+l++++W+ev++++     + ++++r+ +qCk++++ l+k+yk +k+   + + +++st+p+f +l+
  XP_027170030.1 105 CWSEDATHTLIEAWGSHYLDLNRGNLRQKHWQEVADAVnadhaHTKKLHRTDIQCKNRIDTLKKKYKLEKAKFLQSNGRVVSTWPFFASLD 195
                     7****************************************99999*************************99998999*********997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MSSARRPSPA SASHSPPPPP PLNSTSPSSS STTTTTTSHH SPPMSDEDDA GLPPTSTNTN  60
PTTPPSPSPS PPPPPSSSAD IFPPHPPPRP STTTKATSFP IREDCWSEDA THTLIEAWGS  120
HYLDLNRGNL RQKHWQEVAD AVNADHAHTK KLHRTDIQCK NRIDTLKKKY KLEKAKFLQS  180
NGRVVSTWPF FASLDSLIGD SFIKANAPPS GTPPVTRKNS LAAKNTSPSP APASAPATMT  240
VRKEFPVLPP LPSAVPVGPR SKRPAPAPAM GEEAVFRRNF SAMAAAAAAV AEDDEDEEES  300
DTSSAAAVGL GSGGMRRKKR RGAAGKVAAE GYRKLAEAIR GFADIYERVE EAKQRQMVEL  360
EKQRMQFAKD LEIQRMKLFM ESQVQLEKLK RSKRNSQSGD GYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-35Trihelix family protein