PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027170030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 403aa MW: 43606.9 Da PI: 10.0986 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.9 | 9.4e-17 | 105 | 195 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Liea + +l+rg+l++++W+ev++++ + ++++r+ +qCk++++ l+k+yk +k+ + + +++st+p+f +l+ XP_027170030.1 105 CWSEDATHTLIEAWGSHYLDLNRGNLRQKHWQEVADAVnadhaHTKKLHRTDIQCKNRIDTLKKKYKLEKAKFLQSNGRVVSTWPFFASLD 195 7****************************************99999*************************99998999*********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MSSARRPSPA SASHSPPPPP PLNSTSPSSS STTTTTTSHH SPPMSDEDDA GLPPTSTNTN 60 PTTPPSPSPS PPPPPSSSAD IFPPHPPPRP STTTKATSFP IREDCWSEDA THTLIEAWGS 120 HYLDLNRGNL RQKHWQEVAD AVNADHAHTK KLHRTDIQCK NRIDTLKKKY KLEKAKFLQS 180 NGRVVSTWPF FASLDSLIGD SFIKANAPPS GTPPVTRKNS LAAKNTSPSP APASAPATMT 240 VRKEFPVLPP LPSAVPVGPR SKRPAPAPAM GEEAVFRRNF SAMAAAAAAV AEDDEDEEES 300 DTSSAAAVGL GSGGMRRKKR RGAAGKVAAE GYRKLAEAIR GFADIYERVE EAKQRQMVEL 360 EKQRMQFAKD LEIQRMKLFM ESQVQLEKLK RSKRNSQSGD GYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-35 | Trihelix family protein |