PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169814.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 387aa MW: 43091 Da PI: 6.6049

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.1e-16	60	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_027169814.1 60 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 119 78*****************999955656446***********************98 PP
2	AP2	51.1	3.4e-16	162	213	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027169814.1 162 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 213 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MAKSSKQKTS STTTTTTTSI DADNNNSSNS SNSTNPVVKT TKTKRTRKSV PRDSPQQRSS 60 VYRGVTRHRW TGRYEAHLWD KNCWNESQNK KGRQVYLGAY DDEEAAAHAY DLAALKYWGQ 120 DTILNFPLST YENELSEMEG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI 180 GRVFGNKYLY LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYVKRLR PNQTGNGVNN 240 VASSEQYPNV DLEVNVNPIK DDASEEVDLS FIHQQQQQQS SSSPDTSTTT STTAPQPCPG 300 GGATTASSAL GLLLHSSKCK EMLERTSAVD SPSTPPEQPE PPRRSFPDDI QTYFACQDSG 360 NFADEHDNIF GDYNPFASTM FPCELDA

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MAKSSKQKTS STTTTTTTSI DADNNNSSNS SNSTNPVVKT TKTKRTRKSV PRDSPQQRSS  60
VYRGVTRHRW TGRYEAHLWD KNCWNESQNK KGRQVYLGAY DDEEAAAHAY DLAALKYWGQ  120
DTILNFPLST YENELSEMEG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI  180
GRVFGNKYLY LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYVKRLR PNQTGNGVNN  240
VASSEQYPNV DLEVNVNPIK DDASEEVDLS FIHQQQQQQS SSSPDTSTTT STTAPQPCPG  300
GGATTASSAL GLLLHSSKCK EMLERTSAVD SPSTPPEQPE PPRRSFPDDI QTYFACQDSG  360
NFADEHDNIF GDYNPFASTM FPCELDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-88	AP2 family protein