PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169763.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 484aa MW: 54682.8 Da PI: 6.8499

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	161	177	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp+Cgk+++ + L+ XP_027169763.1 161 YVCPNCGKRYNALDALR 177 9*********9998885 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MSVEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALTRR QWVREEDLAK 60 DLKLHSKQLR RTLRFFEEEK LVTRDHRKET AKGAKVYNAA VAATADGHHN GREGDEKIKM 120 HTHSYCCLDY AQIYDVVRYR LHRMRKKLKD ELDNKNTVQE YVCPNCGKRY NALDALRLVS 180 MLDEYFHCEI CNGELVAESE KLTAQEMGDG DDNARRRRRD KLEDMLKKME TQLKPLMDQL 240 NRVKDLPVPE FGNLQAWEAR ASAAARAANG DLNGNDPSKS GQGLGFGGTP MPFLGDTKVE 300 VDFSGTEEKG ENIKTESASK PMKVLPPWMI KQGMILTKEQ RGEVKEEAKM DGSSAPAGSS 360 DEKKSAAETD VKNIQDEYFK AYYAALLQRQ HEQEAALREQ GLPNSSISNG AADTSFERQV 420 GMKSKRDDQD DGDDVEWEEA APADLIKLFN GKRTQVFLCE IILYQKKSCK GFHILLFLAI 480 SSPF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MSVEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALTRR QWVREEDLAK  60
DLKLHSKQLR RTLRFFEEEK LVTRDHRKET AKGAKVYNAA VAATADGHHN GREGDEKIKM  120
HTHSYCCLDY AQIYDVVRYR LHRMRKKLKD ELDNKNTVQE YVCPNCGKRY NALDALRLVS  180
MLDEYFHCEI CNGELVAESE KLTAQEMGDG DDNARRRRRD KLEDMLKKME TQLKPLMDQL  240
NRVKDLPVPE FGNLQAWEAR ASAAARAANG DLNGNDPSKS GQGLGFGGTP MPFLGDTKVE  300
VDFSGTEEKG ENIKTESASK PMKVLPPWMI KQGMILTKEQ RGEVKEEAKM DGSSAPAGSS  360
DEKKSAAETD VKNIQDEYFK AYYAALLQRQ HEQEAALREQ GLPNSSISNG AADTSFERQV  420
GMKSKRDDQD DGDDVEWEEA APADLIKLFN GKRTQVFLCE IILYQKKSCK GFHILLFLAI  480
SSPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	221	RRRRRDK
2	216	222	RRRRRDK