PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169685.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 404aa MW: 44828.7 Da PI: 8.6772

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.5	4.6e-23	37	102	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027169685.1 37 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 102 79***************999********.....****************************98 PP
2	E2F_TDP	72.6	4.3e-23	173	253	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027169685.1 173 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 253 79*******************************9998899*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGMELLPSTN QASEAAAAAA AAAAGGSGGG SQHIYCRKQK SLGLLCSNFL RLYDREGVET 60 IGLDDAAARL GVERRRIYDI VNVLESVGVL ARKAKNRYTW KGFGAIPSAL QLLMEEGMMT 120 NENANDGTWS VKTSDDEEDD TYSSLSNYSS QNHNFNPISA PKLPQSSKYA DNRKEKSLAL 180 LTQNFVKLFL CMDMDMISLD DAAKILLKNG KDPAMTRSKV RRLYDIANVL ASMKFIEKTH 240 HPETRKPAFR WLGMKGISES GADPSAIDGS KKRAFGMDLT NMTVKRSKVE PVGDGGLQQG 300 MKVQLKAQVK REALEDEVLR PKLQIDSRAS TKSYRFGPFS PVNAPQVAAS EDNKETQSHD 360 WESLTATYRP QYHNQALRDL FAHYVEAWKS WYTEVAENPI QLIS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGMELLPSTN QASEAAAAAA AAAAGGSGGG SQHIYCRKQK SLGLLCSNFL RLYDREGVET  60
IGLDDAAARL GVERRRIYDI VNVLESVGVL ARKAKNRYTW KGFGAIPSAL QLLMEEGMMT  120
NENANDGTWS VKTSDDEEDD TYSSLSNYSS QNHNFNPISA PKLPQSSKYA DNRKEKSLAL  180
LTQNFVKLFL CMDMDMISLD DAAKILLKNG KDPAMTRSKV RRLYDIANVL ASMKFIEKTH  240
HPETRKPAFR WLGMKGISES GADPSAIDGS KKRAFGMDLT NMTVKRSKVE PVGDGGLQQG  300
MKVQLKAQVK REALEDEVLR PKLQIDSRAS TKSYRFGPFS PVNAPQVAAS EDNKETQSHD  360
WESLTATYRP QYHNQALRDL FAHYVEAWKS WYTEVAENPI QLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-114	E2F/DP family protein