PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 1281aa    MW: 141594 Da    PI: 8.5272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002911901212323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H r+H
  XP_027168640.1 1190 CPvkGCGKKFFSHKYLVQHRRVH 1212
                      9999*****************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1281 aa     Download sequence    
MASEASSTPV ASGNIEVFSW LKTLPVAPEY HPTLAEFQDP IAYIFKIEKE ASQYGICKIV  60
PPVPAPHKKT AVSNLNKSLV ARSGSPTFTT RQQQIGFCPR KQRPVQKPVW QSGENYTLEE  120
FEAKAKAFER NYLKKSRKKC LTALEIETLY WKAIVDKPFS VEYANDMPGS AFAPRRGGKE  180
GGGEGSNVNA NVTVGDTEWN MRGVSRAKGS LLTFMKEEIP GVTSPMVYVA MMFSWFAWHV  240
EDHDLHSLNY LHTGAGKTWY GVPWDAAAAF EEVIRVHGYG GEINPLVTFS TLGEKTTVMS  300
PEVLIDAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNCG EAANIATPGW LTVAKDAAIR  360
RASINCPPMV SHFQLLYDLA LSSCSRVPRG VRMEPRSSRL KDKKKGEGEM LVKDLFVQDV  420
MQNNDLLYML AEGSSVVILP QNSVVSSFSS NSKAGSQSQV QPGLFPSLGS PDLMMKTTKS  480
LLSEGIVQER KRGVLQGTGS CSMKETVSPS CFDKRLPCSV RGNEFSALAS ESKNMETEKG  540
RASRGDRLSE QGLFSCVTCG ILCFACVAIV QPTDATATYL ITADRSEFKD WGETSDVLTV  600
VNGDEVPPKS DSCSGWMYKR NPDELFDVPV QSGGLYQSVD DEIVGLIPNT EAQRDTSSLG  660
LLALTYGNSS DSDEDDVDAN NHTEACQNEA KDCSPENGLH CHDAGLHKGG SRNNAISCSE  720
FSCADVVPLQ IIGSSDKQGT TKSTSESRRH PPPDGTIEYK RRSFPSMEID NLADRCRHQV  780
KEQDASSPSP VAHKAETITS TAIVEFENKT LPFAGRPDED SSRMHVFCLQ HAVQVEKQLR  840
SIGGVNVLLL CHPDYPNVEA QAKKMAEELG GHYVWSNISF RQASKEDEET IQAALESQEA  900
IHGNGDWAVK LGINLYYSAS LSRSPLYSKQ MPYNFVIYNA FGRSSPVNSP TKDDSLGNWP  960
GKPKKTVVAG KWCGKVWMSN QVHPFLAERD EEEQERSIPS CMKADLKPER PLESTHVQTG  1020
ETTARTCRTG RKRKTAAEIR PAVKAKSAKV EERDKAAEDS PVNHSQHQCK SNRRNTQRKK  1080
ENVESSNKGN KVVRNRKQFN LETEEEQEGG PSTRLRKRAE KPSKGQGAKS LETKSVAKKQ  1140
PNGLKAKKSP AGSNKMKVKD EKTEYPCDME GCTMGFGSKQ ELVLHKRNIC PVKGCGKKFF  1200
SHKYLVQHRR VHVDDRPLKC PWKGCKMSFK WAWARTEHIR VHTGARPYVC AEPGCNQTFR  1260
FVSDFSRHKR KTGHSSSKKG S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183GGKEGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0C2H2 family protein