PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168529.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 320aa    MW: 34516.3 Da    PI: 7.6664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182112491255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_027168529.1 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 249
                     6678889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MMAGNPNWWS MNSMHPQSHQ HQQFPSTTTF HSPAPPPPPL PPQYNLYGGS SSPLSANSLS  60
DHHPNQDFPR SWRQLLLGGL ANEQERFVGS PFQNKKLENW EDQTLNPSLR VPVSDVKQEV  120
ALSTSVLFGA AADEEFQAST RPSWSQVVQA SSPTSCVTSL SSNLLNFSSS KAEGRNQNPE  180
NSSECNSSIA GGVSKKPRIQ HSTAQPALKV RKEKLGDRIT ALHQLVSPFG KTDTASVLSE  240
AIGYIRFLQA QIEALSSPYL GNVSGGSGSM GQGHQQQSVV QDRPKDLKSR GLCLVPISCT  300
QHVGSDNGAD YWAPALGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-52bHLH family protein