PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168468.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 527aa MW: 58754.3 Da PI: 6.6535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.8e-07	276	297	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_027168468.1 276 FCTICGKGFKRDANLRMHMRGH 297 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MDPDERLRTD PWTKSSSPAT ASDALRQLSP DNQSFTNFSS QQQKWEHSSS MDYRTRIEQQ 60 FSEFTSPSEN LSSAACGANN QTKNHGHEDK RMRETSNSNN VQDWDPRGML NNLSFLEQKI 120 HQLQDLVHLI VGRRCQAVGQ SNELLVQQQQ LITADLTSII VQLISTAGSL LPSVKHSLSS 180 VNPPVTQLGQ FGGSITPPVT SFDNSGRVVH CNVKKVEDQP NEVDLIGNAG IEQNYVVEEH 240 ESKDEEDADE GENLPPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL RMHMRGHGDE 300 YKTPAALAKP NKESTSEPTL IKRYSCPFVG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK 360 SYTCSRCHTK KFSVIADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL 420 DESKVSAGQS DAGQTNELIN KVEQIDFSAQ SNIPSGSGYQ NVMDGKGSID DPASYFSPLN 480 FDPNNLSGLH EFPRPSFEDS ESSFCFLLSG SSEYHQKTGR FSGSGNL

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MDPDERLRTD PWTKSSSPAT ASDALRQLSP DNQSFTNFSS QQQKWEHSSS MDYRTRIEQQ  60
FSEFTSPSEN LSSAACGANN QTKNHGHEDK RMRETSNSNN VQDWDPRGML NNLSFLEQKI  120
HQLQDLVHLI VGRRCQAVGQ SNELLVQQQQ LITADLTSII VQLISTAGSL LPSVKHSLSS  180
VNPPVTQLGQ FGGSITPPVT SFDNSGRVVH CNVKKVEDQP NEVDLIGNAG IEQNYVVEEH  240
ESKDEEDADE GENLPPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL RMHMRGHGDE  300
YKTPAALAKP NKESTSEPTL IKRYSCPFVG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK  360
SYTCSRCHTK KFSVIADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL  420
DESKVSAGQS DAGQTNELIN KVEQIDFSAQ SNIPSGSGYQ NVMDGKGSID DPASYFSPLN  480
FDPNNLSGLH EFPRPSFEDS ESSFCFLLSG SSEYHQKTGR FSGSGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein