PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168145.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 344aa MW: 37963.5 Da PI: 9.8388

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	52	135	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ s++p++ +l+ XP_027168145.1 52 EWSEGAVSSLLEAYEAKWILRNRAKLKGQDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 135 5***********************************87777777888999**************999986......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDREANSQEK PSLLSTTTCS NNNREDHHSP RKPQVVSSNT GGGNSDRLKR DEWSEGAVSS 60 LLEAYEAKWI LRNRAKLKGQ DWEDVAKHVS ARANSTKSPK TQTQCKNKIE SMKKRYRSES 120 ATADASSWPL YPRLDLLLRG NAPSQPPQLP PPPQLPPPPP PPPVASNPHL LLLEQPQHPP 180 PPPPALAHAN CPQNSHDSNG FDRVAKEDGV GPKLSDQESD KNATDTDSST PAMYSDKEKL 240 KSKNIKTRIE KKKQRRESCA IAESIRLLAE VVVRSEQARM DTMRELERMR AESEAKRGEM 300 DLKRTEIIAN TQLEIAKIFA AGNGNGNGNG NGKGVDSSLR IGRS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDREANSQEK PSLLSTTTCS NNNREDHHSP RKPQVVSSNT GGGNSDRLKR DEWSEGAVSS  60
LLEAYEAKWI LRNRAKLKGQ DWEDVAKHVS ARANSTKSPK TQTQCKNKIE SMKKRYRSES  120
ATADASSWPL YPRLDLLLRG NAPSQPPQLP PPPQLPPPPP PPPVASNPHL LLLEQPQHPP  180
PPPPALAHAN CPQNSHDSNG FDRVAKEDGV GPKLSDQESD KNATDTDSST PAMYSDKEKL  240
KSKNIKTRIE KKKQRRESCA IAESIRLLAE VVVRSEQARM DTMRELERMR AESEAKRGEM  300
DLKRTEIIAN TQLEIAKIFA AGNGNGNGNG NGKGVDSSLR IGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-108	Trihelix family protein