PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168112.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 299aa    MW: 32321.1 Da    PI: 8.8061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.3e-10956347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eEd  +  a++++ +g    +W++Ia++++ +++  ++k ++ ++
   XP_027168112.1  9 VWSREEDIAFESAIAMHWTGdskeQWDKIASMVP-NKSIDELKQHYKTL 56
                     6*********************************.***********986 PP
2Myb_DNA-binding38.92e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_027168112.1 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MSASSSSVVW SREEDIAFES AIAMHWTGDS KEQWDKIASM VPNKSIDELK QHYKTLVEDV  60
EAIEGGLVPL PNYSGEEASS STKDHQSFSA ITATDRRSNF GYRSAFPGLG HDSSGQGGGK  120
GGSRSEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMSRDRR RSSIHDITSV NNGDVSSHQA PITGQQTNTT PSATVAAALG PAMKHRGQQT  240
MHGLGVYGAP VGHPVVAAAA APGHMASAVG TPVLLPHGHH PPYVVPLAYP MAPPQPMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-56MYB family protein