PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168004.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 386aa MW: 42895.5 Da PI: 4.588

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	6e-15	85	130	3	52
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ykGVr +k +g+++AeIrdp +r kr++lg+++ +e+Aa+ + a +++ XP_027168004.1 85 YKGVRKRK-WGKYAAEIRDP----IRgKRVWLGTYDNEEDAARVYQAKKLE 130 9**999.******7....246**************99988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEEILKSVKR IRITYTDPDA TDSDSNSDDQ FKDRRNKRKE IVINRDLPPG SPCVQAPKEH 60 FANAYRISCN IGEFSKKSQK SSSMYKGVRK RKWGKYAAEI RDPIRGKRVW LGTYDNEEDA 120 ARVYQAKKLE FDRIMADRKA NLSSSGASAV EGSVACGSAS EETNALCSHP SPSSVLEIST 180 STPMAKAGGG AKLNRTEDVE PLLSGSTENG LILPLVCQDF NPRPDDGLLY CSNMGKQAIS 240 ILAEDASREQ PVVSSINEPS DFSHAIKEME GWQPFSNNQS VNRYSILNTK DQLFNGNNAV 300 GLETSTSPAD SAVPPSISAH LNFEENLRYD NDLKELGFEE NLTYSNRSDE LFDCLSQDIS 360 MGQPELDEEE IAWLNKDLFN DDQFCN

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEEILKSVKR IRITYTDPDA TDSDSNSDDQ FKDRRNKRKE IVINRDLPPG SPCVQAPKEH  60
FANAYRISCN IGEFSKKSQK SSSMYKGVRK RKWGKYAAEI RDPIRGKRVW LGTYDNEEDA  120
ARVYQAKKLE FDRIMADRKA NLSSSGASAV EGSVACGSAS EETNALCSHP SPSSVLEIST  180
STPMAKAGGG AKLNRTEDVE PLLSGSTENG LILPLVCQDF NPRPDDGLLY CSNMGKQAIS  240
ILAEDASREQ PVVSSINEPS DFSHAIKEME GWQPFSNNQS VNRYSILNTK DQLFNGNNAV  300
GLETSTSPAD SAVPPSISAH LNFEENLRYD NDLKELGFEE NLTYSNRSDE LFDCLSQDIS  360
MGQPELDEEE IAWLNKDLFN DDQFCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	KGVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	1e-20	ERF family protein