PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027167962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 395aa MW: 43374.3 Da PI: 10.1118 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.7 | 3.6e-14 | 68 | 155 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++ + +qCk++++ ++k+yk +k+ + + s++p+f++l+ XP_027167962.1 68 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYTKapkTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 155 7*************************************855556551116679*****************99997..67778******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence |
MEDDEETQSH PSGGTGSPVS PRPNGRITVT VAAVPPSQNT LTLALPIQHH QQQTRPTGNS 60 GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKD VADIVSSRED YTKAPKTDIQ 120 CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP SAKLNSSVLA SGGGAGAGPS 180 YSGSQRVVPM GIPMGVRSAP QLRQQQEKFP QQHLQKQKQQ FRKRPPPPPA VDSDEESEPD 240 GSPDSADDFP PATYERKRPR NQREPMNLGG GVKPAGPGTN RGREGGADKA SVVVGKNWGN 300 SVRELTRAIL KFGEAYEQAE SSKLQQLVDM EKQRMKFAKE LELQRMQFFM KTQLELSQLK 360 TSSSRRVGNN NHHHHSSNNI NATTHTNNHH SDSSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-56 | Trihelix family protein |