PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027167962.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 395aa    MW: 43374.3 Da    PI: 10.1118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027167962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.6e-1468155186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ +++   + +qCk++++ ++k+yk +k+    +  +  s++p+f++l+
  XP_027167962.1  68 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYTKapkTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 155
                     7*************************************855556551116679*****************99997..67778******98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MEDDEETQSH PSGGTGSPVS PRPNGRITVT VAAVPPSQNT LTLALPIQHH QQQTRPTGNS  60
GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKD VADIVSSRED YTKAPKTDIQ  120
CKNRIDTVKK KYKLEKAKIA AGGGPSKWPF FERLDQLIGP SAKLNSSVLA SGGGAGAGPS  180
YSGSQRVVPM GIPMGVRSAP QLRQQQEKFP QQHLQKQKQQ FRKRPPPPPA VDSDEESEPD  240
GSPDSADDFP PATYERKRPR NQREPMNLGG GVKPAGPGTN RGREGGADKA SVVVGKNWGN  300
SVRELTRAIL KFGEAYEQAE SSKLQQLVDM EKQRMKFAKE LELQRMQFFM KTQLELSQLK  360
TSSSRRVGNN NHHHHSSNNI NATTHTNNHH SDSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-56Trihelix family protein