PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167848.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 664aa MW: 73237.1 Da PI: 6.8212

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.2	7.2e-12	324	380	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g XP_027167848.1 324 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 380 78*****************433.44555535555.779999************98 PP
2	AP2	46.2	1.1e-14	425	474	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027167848.1 425 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 474 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MSNWLGFSLT PHLRIHDDDD EQNDFGGQSG EEVEQERCKE QQQNAGIPGP TITGGGGADQ 60 NQQRGGGSTP PTSVAMALRS DGSLCMMDTF GLPSSGAAHQ EDWRRYENAL DDATNLRNGE 120 GPKLEDFMGR CYTTNSPPPD PSSNIERRVY CQLPQQQQGE INVNIPPHCN DWEMEIERRE 180 HLITTTATPS SSRLIHPSYP FSYHMYSQDT ISNRCDPNSN MNGMLYHVPF DGATTVSGFK 240 SWLRQTPSPA DTNEFSVQES NQNNFEALSL GINPGAADQP GTSSLVLQVA DTNKKRDNSM 300 ANKSSAKDSA APRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG 360 YDKEEKAARA YDLAALKYWG PTTHINFPLC SYGKELEDMK AMTRQEFVAH LRRKSSGFSR 420 GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN 480 FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDG NNSCASSASP QPLVAITNRE 540 ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD PVGSTGSPGK 600 NGGEFGVEGD YSQLYFSLEG PNSKPKYGDG NNNGSEDRDT SSNRLANTGS VHPVPMFTLW 660 NSSI

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MSNWLGFSLT PHLRIHDDDD EQNDFGGQSG EEVEQERCKE QQQNAGIPGP TITGGGGADQ  60
NQQRGGGSTP PTSVAMALRS DGSLCMMDTF GLPSSGAAHQ EDWRRYENAL DDATNLRNGE  120
GPKLEDFMGR CYTTNSPPPD PSSNIERRVY CQLPQQQQGE INVNIPPHCN DWEMEIERRE  180
HLITTTATPS SSRLIHPSYP FSYHMYSQDT ISNRCDPNSN MNGMLYHVPF DGATTVSGFK  240
SWLRQTPSPA DTNEFSVQES NQNNFEALSL GINPGAADQP GTSSLVLQVA DTNKKRDNSM  300
ANKSSAKDSA APRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG  360
YDKEEKAARA YDLAALKYWG PTTHINFPLC SYGKELEDMK AMTRQEFVAH LRRKSSGFSR  420
GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN  480
FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDG NNSCASSASP QPLVAITNRE  540
ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD PVGSTGSPGK  600
NGGEFGVEGD YSQLYFSLEG PNSKPKYGDG NNNGSEDRDT SSNRLANTGS VHPVPMFTLW  660
NSSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-120	AP2 family protein