PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167588.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 568aa MW: 60646 Da PI: 8.9759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027167588.1 98 FICEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	12.5	0.00043	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_027167588.1 174 WKCDKCSKRYAVQSDWKAHSKTC 196 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MMKGLIVQQQ PAQPVMEENM SNLTSASNEA SVSSVNRNDN GSGGSIYPPQ QYFAPQNQTQ 60 VAQPQQAVKK KRNLPGNPDP DAEVLALSPK TLLATNRFIC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT NKEVKKKVYV CPEASCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS 180 KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAIPGNPLLS 240 SQAAGASTVP RHVNNINPLQ QQFGNQDNPH LFSLKKEQHT FNLRPEIPPW LACSPMPAGA 300 GPGPGPPPVD LTSSIFPSPR LGPGFSECHQ ELSLHENPNP NLGPNLPPFH PTTSPHISAT 360 ALLQKAAQMG AAMGSSKAGA GGAAPPAVML NTRPHQAHVS AAAAADSATN ITTGNFGLNL 420 SSREDLAGGT FVNGLASYGN KAADPAAGGP PPPPPPTSFL QDMMMNSLSS SSATTGFEGS 480 TFEDAFGGIL NPKKTSNSSF MRANDSEGGG GGGGGIVGGG NDRMTRDFLG LRPLSHSDIF 540 NIAGFGNCMN TTASNEHHQN ASQKSWQG

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MMKGLIVQQQ PAQPVMEENM SNLTSASNEA SVSSVNRNDN GSGGSIYPPQ QYFAPQNQTQ  60
VAQPQQAVKK KRNLPGNPDP DAEVLALSPK TLLATNRFIC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT NKEVKKKVYV CPEASCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAIPGNPLLS  240
SQAAGASTVP RHVNNINPLQ QQFGNQDNPH LFSLKKEQHT FNLRPEIPPW LACSPMPAGA  300
GPGPGPPPVD LTSSIFPSPR LGPGFSECHQ ELSLHENPNP NLGPNLPPFH PTTSPHISAT  360
ALLQKAAQMG AAMGSSKAGA GGAAPPAVML NTRPHQAHVS AAAAADSATN ITTGNFGLNL  420
SSREDLAGGT FVNGLASYGN KAADPAAGGP PPPPPPTSFL QDMMMNSLSS SSATTGFEGS  480
TFEDAFGGIL NPKKTSNSSF MRANDSEGGG GGGGGIVGGG NDRMTRDFLG LRPLSHSDIF  540
NIAGFGNCMN TTASNEHHQN ASQKSWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-112	C2H2 family protein