PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167339.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 610aa MW: 70236.5 Da PI: 5.2358

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	581	599	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C++Cg+ F ++ L+rH+ XP_027167339.1 581 RCEKCGEEFESRNKLHRHL 599 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MASSEKPKRC LYEVLGLSRD CSVDEIRSAY KKLALQRHPD KLVKSGLSEA EATAQFQELV 60 NAYEVLSDPR ERAWYDSHRS QILFSSSSPA TGNSANSVYV PNFFSYFSNS VYSGYSDSGK 120 GFYKVYGDVF DKIYQNELNF AKKLGLGFPK EAPVMGNLDS YYTQVTAFYN YWLAFVTLMD 180 FCWVDQYDVM AGPNRKSRRV MEEENKKLRK KARREYNDTV RGLAEFVKKR DKRVIDMQMK 240 RAEEVERRKE EERERKKELE RQKAERAKKY EEPEWAKVED IEDEDTEEIV DDDKKKKGDG 300 KELYCVACGK KFKSDKQWKN HEQSKKHKEK VAELRNTFIE EDEEYEEGKT EEVGEEYEEE 360 DEVGAEESGF LSADDEVDEL MDHFNSTMEI REEGNDEAQS SEQDGLVDRD SGIGLKELQS 420 DMRSDDDEAS NLEAMVSGQK NRKNGSLDQK PKRASNKIPV EVDSNEMDFM AYNNMKGSRR 480 NRGGRKQRGR TLEEAAQTEI AEAHVEAENN GYHDTMKEAS SDSFLETQSR GKEDDESETS 540 HKLSRQAVNK KGTAKSDSNF KSKEAPKGRK KKANTKVISN RCEKCGEEFE SRNKLHRHLG 600 DTGHATLKSR

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MASSEKPKRC LYEVLGLSRD CSVDEIRSAY KKLALQRHPD KLVKSGLSEA EATAQFQELV  60
NAYEVLSDPR ERAWYDSHRS QILFSSSSPA TGNSANSVYV PNFFSYFSNS VYSGYSDSGK  120
GFYKVYGDVF DKIYQNELNF AKKLGLGFPK EAPVMGNLDS YYTQVTAFYN YWLAFVTLMD  180
FCWVDQYDVM AGPNRKSRRV MEEENKKLRK KARREYNDTV RGLAEFVKKR DKRVIDMQMK  240
RAEEVERRKE EERERKKELE RQKAERAKKY EEPEWAKVED IEDEDTEEIV DDDKKKKGDG  300
KELYCVACGK KFKSDKQWKN HEQSKKHKEK VAELRNTFIE EDEEYEEGKT EEVGEEYEEE  360
DEVGAEESGF LSADDEVDEL MDHFNSTMEI REEGNDEAQS SEQDGLVDRD SGIGLKELQS  420
DMRSDDDEAS NLEAMVSGQK NRKNGSLDQK PKRASNKIPV EVDSNEMDFM AYNNMKGSRR  480
NRGGRKQRGR TLEEAAQTEI AEAHVEAENN GYHDTMKEAS SDSFLETQSR GKEDDESETS  540
HKLSRQAVNK KGTAKSDSNF KSKEAPKGRK KKANTKVISN RCEKCGEEFE SRNKLHRHLG  600
DTGHATLKSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	232	RKSRRVMEEENKKLRKKARREYNDTVRGLAEFVKKRDK
2	206	214	KKLRKKARR
3	294	331	RKSRRVMEEENKKLRKKARREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-147	C2H2 family protein