PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167236.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 416aa MW: 46626.8 Da PI: 8.3959

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_027167236.1 36 YVCEICNQGFQRDQNLQMHRRRH 58 9*********************9 PP
2	zf-C2H2	16.2	3e-05	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_027167236.1 113 WVCEKCSKGYAVQSDYKAHLKTC 135 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MESTVREKEG LQELQVDPDA EVVSLSPKTL LESDRYVCEI CNQGFQRDQN LQMHRRRHKV 60 PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK KHFRRKHSNQ KQWVCEKCSK 120 GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNLGRIRSES HSLQPAATAC 180 LSRTASSPSP SSDTNVSASP WPVLMAKPVA MDTKFVAPTR DSNKSPHNLE LQLLTTSSSS 240 PMDMISVSKK DEDHSALLQL SIGSSDFNEK NEMESSNSEK PIMDASRIKE EAREQLAVAI 300 SEKAFAEEAR RQAKRQIELA EQEFANAKRI RQQAQAELEK AQALKEQATK QINATIWQIT 360 CQTCKEKFNA SRTARAAAHA PHHESALTLM GYISSALSDG EVVKGDRLVH PKYALC

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MESTVREKEG LQELQVDPDA EVVSLSPKTL LESDRYVCEI CNQGFQRDQN LQMHRRRHKV  60
PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK KHFRRKHSNQ KQWVCEKCSK  120
GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNLGRIRSES HSLQPAATAC  180
LSRTASSPSP SSDTNVSASP WPVLMAKPVA MDTKFVAPTR DSNKSPHNLE LQLLTTSSSS  240
PMDMISVSKK DEDHSALLQL SIGSSDFNEK NEMESSNSEK PIMDASRIKE EAREQLAVAI  300
SEKAFAEEAR RQAKRQIELA EQEFANAKRI RQQAQAELEK AQALKEQATK QINATIWQIT  360
CQTCKEKFNA SRTARAAAHA PHHESALTLM GYISSALSDG EVVKGDRLVH PKYALC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-118	C2H2 family protein