PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166856.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 419aa MW: 45236.6 Da PI: 6.7924

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.2e-33	217	275	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ dp++v++tYeg+H h+ XP_027166856.1 217 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPSCGVKKRVERSSGDPTTVVTTYEGTHMHP 275 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPMAS SPPPSYGGGG 60 GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS 120 PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE 180 DRDQDKTKKH LKPKKKNQKG QKEPRFAFMT KSEVDHLDDG YRWRKYGQKA VKNSPFPRSY 240 YRCTSPSCGV KKRVERSSGD PTTVVTTYEG THMHPTPLTS RGSLGLVAES SASFICGPSG 300 VGSSNGGGGA GEAVTIGAGF GGAGSGSGPG PSSFFPPPMS QYHHQQPQQF QQQQLQQLPF 360 FRVPTAPASL NFNTHSSSFA HMIVQESSYC PPPPSSFVDN GLLEDIVPSE MLIKEPKKE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPMAS SPPPSYGGGG  60
GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS  120
PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE  180
DRDQDKTKKH LKPKKKNQKG QKEPRFAFMT KSEVDHLDDG YRWRKYGQKA VKNSPFPRSY  240
YRCTSPSCGV KKRVERSSGD PTTVVTTYEG THMHPTPLTS RGSLGLVAES SASFICGPSG  300
VGSSNGGGGA GEAVTIGAGF GGAGSGSGPG PSSFFPPPMS QYHHQQPQQF QQQQLQQLPF  360
FRVPTAPASL NFNTHSSSFA HMIVQESSYC PPPPSSFVDN GLLEDIVPSE MLIKEPKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	9e-42	WRKY family protein