PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166639.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 458aa MW: 49980.1 Da PI: 8.0887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_027166639.1 54 YICEVCHKGFQRDQNLQLHRRGH 76 89*******************88 PP
2	zf-C2H2	13.2	0.00027	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_027166639.1 130 WKCDKCSKRYAVQSDWKAHTKIC 152 58*****************9987 PP
3	zf-C2H2	11.1	0.0012	160	178	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_027166639.1 160 DCGTIFSRKDSFVTHRAFC 178 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSKYVVQDFE EEDEQLPGTV ITQSSNDSPN PLDNDPDAEV VALSPRTLMA TNRYICEVCH 60 KGFQRDQNLQ LHRRGHNLPW KLKQRPTTQV KKRVYVCPEP SCVHHDPSRA LGDLTGIKKH 120 FCRKHGEKKW KCDKCSKRYA VQSDWKAHTK ICGTREYRCD CGTIFSRKDS FVTHRAFCDA 180 LIEENNKMNQ TLAAATGGML QHQAQELFPS PLPVPDPTNP MMNLSISHAN MDTSVLKPLS 240 LNAQGLLAVS SNVDPIFSPN GANPRTSFST LGGHNGNSHL PIGSAFSSAT ALLQKAAEMG 300 AKISDNSMAP ILLRGFSGYS TSSMNTSNSI QEGSSAVGGQ TSGGVPNSLY MRNLDAYGKS 360 TEAGIQRINS FSASQSGGLY DPNTLLMHSS NGTSGILSDR DHVLMGGSER LTLDFLGVEP 420 AAAAAQSSFA KKRRLEGDVM GLDYSKAQQN LHHLHSDW

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSKYVVQDFE EEDEQLPGTV ITQSSNDSPN PLDNDPDAEV VALSPRTLMA TNRYICEVCH  60
KGFQRDQNLQ LHRRGHNLPW KLKQRPTTQV KKRVYVCPEP SCVHHDPSRA LGDLTGIKKH  120
FCRKHGEKKW KCDKCSKRYA VQSDWKAHTK ICGTREYRCD CGTIFSRKDS FVTHRAFCDA  180
LIEENNKMNQ TLAAATGGML QHQAQELFPS PLPVPDPTNP MMNLSISHAN MDTSVLKPLS  240
LNAQGLLAVS SNVDPIFSPN GANPRTSFST LGGHNGNSHL PIGSAFSSAT ALLQKAAEMG  300
AKISDNSMAP ILLRGFSGYS TSSMNTSNSI QEGSSAVGGQ TSGGVPNSLY MRNLDAYGKS  360
TEAGIQRINS FSASQSGGLY DPNTLLMHSS NGTSGILSDR DHVLMGGSER LTLDFLGVEP  420
AAAAAQSSFA KKRRLEGDVM GLDYSKAQQN LHHLHSDW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein