PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027166527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 13641.2 Da PI: 6.6223 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 59.5 | 9.2e-19 | 7 | 60 | 47 | 100 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e XP_027166527.1 7 HELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 60 6789*********************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MVAFSRHELP EHQRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDVL QTQLALAQAE 60 VVQMRMRQFS SISPGTATNS PDHNNITSPS SSRHTQSHHD RTSLFAMGMV IDHQASMGES 120 LWSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-33 | LBD family protein |