PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166476.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 818aa MW: 94417.8 Da PI: 8.0495

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	2e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027166476.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MDCSKLVEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKSHE LMGKEAGGMG SVGYTREDLK RYLRTRRERS LKYGEAGSML NYFQEQTLEN 180 PSFFHAVQLD CEEQITNIFW ADAGMLIDYK FFGDVVTFDT TYKKNKEYRP LEVFVGFNQH 240 RQIVIFGAAL MYDETIDSFK WVFGTFLEAM CGKRPSTILT DQDHAMAAAL SVVMPETFHG 300 LCTFHIRRNF MKHLGNHYKE NSDLPYMFGA CMYEFEEVEQ FNRVWEAMVK KHDLENNEWL 360 SGLYRIRDKW ARCMMKERWT AGMRSTQLSE SLNAAIKNHL KLDHDLVQFF RHFNRVVDEK 420 RHNELIAEYE MRQKLPMVGL RQTPMLVHAS ETYSPTVFVA FQNEYGESTA MVILRQQDAA 480 MFVEFAVMRY DGGLERIVVF NRNDLSVHCS CKKYENEGIL CGHALKVFDT VGIKIIPPEY 540 IKRRWTKRAR AGDCFDRRGQ EVVADPKVMI STRYRELAPA MIKVATRAAM SEDTSKVAIT 600 VISDLSKRVE LLLSESEEQP LQNQKNLNME ERDKIEIVNE MGEAVVARGI KKRGGGKKSR 660 VMRSWVDKFD RVKRKSRLSR TTQTTVSESE PTSVSFEEYM FMGCRSSTDS VSTHSMSQTV 720 NGPPNVVAPD IDESQTIHRL ANQGPPASVP TEWMHPRFPI FSKHNSIRDV LMEERWAIST 780 HCDVDAYHVF APSPQGRNNT QGLQLRVDVA SPQNEVDE

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MDCSKLVEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKSHE LMGKEAGGMG SVGYTREDLK RYLRTRRERS LKYGEAGSML NYFQEQTLEN  180
PSFFHAVQLD CEEQITNIFW ADAGMLIDYK FFGDVVTFDT TYKKNKEYRP LEVFVGFNQH  240
RQIVIFGAAL MYDETIDSFK WVFGTFLEAM CGKRPSTILT DQDHAMAAAL SVVMPETFHG  300
LCTFHIRRNF MKHLGNHYKE NSDLPYMFGA CMYEFEEVEQ FNRVWEAMVK KHDLENNEWL  360
SGLYRIRDKW ARCMMKERWT AGMRSTQLSE SLNAAIKNHL KLDHDLVQFF RHFNRVVDEK  420
RHNELIAEYE MRQKLPMVGL RQTPMLVHAS ETYSPTVFVA FQNEYGESTA MVILRQQDAA  480
MFVEFAVMRY DGGLERIVVF NRNDLSVHCS CKKYENEGIL CGHALKVFDT VGIKIIPPEY  540
IKRRWTKRAR AGDCFDRRGQ EVVADPKVMI STRYRELAPA MIKVATRAAM SEDTSKVAIT  600
VISDLSKRVE LLLSESEEQP LQNQKNLNME ERDKIEIVNE MGEAVVARGI KKRGGGKKSR  660
VMRSWVDKFD RVKRKSRLSR TTQTTVSESE PTSVSFEEYM FMGCRSSTDS VSTHSMSQTV  720
NGPPNVVAPD IDESQTIHRL ANQGPPASVP TEWMHPRFPI FSKHNSIRDV LMEERWAIST  780
HCDVDAYHVF APSPQGRNNT QGLQLRVDVA SPQNEVDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1 family protein