PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165523.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 730aa MW: 81157.2 Da PI: 9.1783

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.5	6.2e-22	644	724	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++r++ k +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k+ +k+r +++pyfd+++ XP_027165523.1 644 KWKPEEIKKLIRMRGELHNRFQVVKGRMALWEEISSNLLSGGISRSPGQCKSLWASLVQKYEESKTDSKSR-----EKWPYFDDMN 724 7******************************************************************96.....78****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MVMKTTLVIP ALDARTPIFA SSFTMELIKK RLKEFGIFIP SRLKIFKTKM RFVAGPFEVE 60 PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDETPLDGKV FDRGALEELS KEGVTLMMSD 120 STNVLSPGRT LSETVVADAL LRRISAAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMALRTYLDA AWKDGKAPID PSTLVKVEDI DSYSPKDLLI VTTGSQAEPR AALNLASYGS 240 SHSLKLTQED LILYSAKVIP GNETRVMKML NRISEIGSAI VMGKNEYLHS SGHAHREELD 300 EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTVVIK NGEMLGVSHL RNRRVLSNGF 360 TSLGKENLQL MYSDGDKAFG TSTELCIDER LRIASDGIIV ISMEILRPQA SNSLTEKTLK 420 GKIKITTRCL WLDKGKLLDA LHKAAHAALS SCPVNSPLVH MERTVSEVLR KVVRKYSSKR 480 PEVIAIALEN PAGVLADDIN GKLSERSRVG LGISTLRKAV DGHQRKRRPN GAQEVDDSDS 540 HAHLRSIMQQ DLEDNEMDFD KLLSKDEANS VSTSSEAFSS NGAESDNFWK SFVQIPTNNV 600 LEEGNTSLQL QKEHYENSEI DSGELDSGLP KSELKSSKSV KPNKWKPEEI KKLIRMRGEL 660 HNRFQVVKGR MALWEEISSN LLSGGISRSP GQCKSLWASL VQKYEESKTD SKSREKWPYF 720 DDMNTIFVRH

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MVMKTTLVIP ALDARTPIFA SSFTMELIKK RLKEFGIFIP SRLKIFKTKM RFVAGPFEVE  60
PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDETPLDGKV FDRGALEELS KEGVTLMMSD  120
STNVLSPGRT LSETVVADAL LRRISAAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMALRTYLDA AWKDGKAPID PSTLVKVEDI DSYSPKDLLI VTTGSQAEPR AALNLASYGS  240
SHSLKLTQED LILYSAKVIP GNETRVMKML NRISEIGSAI VMGKNEYLHS SGHAHREELD  300
EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTVVIK NGEMLGVSHL RNRRVLSNGF  360
TSLGKENLQL MYSDGDKAFG TSTELCIDER LRIASDGIIV ISMEILRPQA SNSLTEKTLK  420
GKIKITTRCL WLDKGKLLDA LHKAAHAALS SCPVNSPLVH MERTVSEVLR KVVRKYSSKR  480
PEVIAIALEN PAGVLADDIN GKLSERSRVG LGISTLRKAV DGHQRKRRPN GAQEVDDSDS  540
HAHLRSIMQQ DLEDNEMDFD KLLSKDEANS VSTSSEAFSS NGAESDNFWK SFVQIPTNNV  600
LEEGNTSLQL QKEHYENSEI DSGELDSGLP KSELKSSKSV KPNKWKPEEI KKLIRMRGEL  660
HNRFQVVKGR MALWEEISSN LLSGGISRSP GQCKSLWASL VQKYEESKTD SKSREKWPYF  720
DDMNTIFVRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein