PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027165520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 891aa MW: 98761.2 Da PI: 8.864 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.2 | 8.2e-22 | 805 | 885 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++r++ k +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k+ +k+r +++pyfd+++ XP_027165520.1 805 KWKPEEIKKLIRMRGELHNRFQVVKGRMALWEEISSNLLSGGISRSPGQCKSLWASLVQKYEESKTDSKSR-----EKWPYFDDMN 885 7********************************************************************96.....78******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence |
MAAISFSAVS LYPYAHKGSL FLAANPNPSR QCISCCGPSH STSTIGSRGG SREPRKRSRG 60 RAEGPRKSME DSVQRKMEQF YEGSDGPPLR VLPIGGLGEI GMNCMLVGNF DRYILIDAGV 120 MFPGYDELGV QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GNSCFGCTHA YICIFLYNGV 180 AFPVFVQLIK KRLKEFGIFI PSRLKIFKTK MRFVAGPFEV EPIRVTHSIP DCCGLVLRCA 240 DGTILHTGDW KIDETPLDGK VFDRGALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADA 300 LLRRISAAKG RVITTQFASN IHRLGSVKAA ADLTGRKLVF VGMALRTYLD AAWKDGKAPI 360 DPSTLVKVED IDSYSPKDLL IVTTGSQAEP RAALNLASYG SSHSLKLTQE DLILYSAKVI 420 PGNETRVMKM LNRISEIGSA IVMGKNEYLH SSGHAHREEL DEVLKIVKPQ HFLPIHGELL 480 FLKEHELLGK STGIRHTVVI KNGEMLGVSH LRNRRVLSNG FTSLGKENLQ LMYSDGDKAF 540 GTSTELCIDE RLRIASDGII VISMEILRPQ ASNSLTEKTL KGKIKITTRC LWLDKGKLLD 600 ALHKAAHAAL SSCPVNSPLV HMERTVSEVL RKVVRKYSSK RPEVIAIALE NPAGVLADDI 660 NGKLSERSRV GLGISTLRKA VDGHQRKRRP NGAQEVDDSD SHAHLRSIMQ QDLEDNEMDF 720 DKLLSKDEAN SVSTSSEAFS SNGAESDNFW KSFVQIPTNN VLEEGNTSLQ LQKEHYENSE 780 IDSGELDSGL PKSELKSSKS VKPNKWKPEE IKKLIRMRGE LHNRFQVVKG RMALWEEISS 840 NLLSGGISRS PGQCKSLWAS LVQKYEESKT DSKSREKWPY FDDMNTIFVR H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |