PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164779.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 540aa MW: 59483.1 Da PI: 6.564

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.2e-15	166	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027164779.1 166 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 225 57*****************666664477446***********************98 PP
2	AP2	49	1.5e-15	268	319	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_027164779.1 268 SQYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 319 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MNSNNWLSFP LSPTHSSIPA HLQTAQSHHF SLGLVNENID NPFQNQEWNL INTHGNSEVP 60 KVADFLGVGK SENQSEIVSY SELQANDSDY LFSNSSLVPV PNALAAAASN NYELQESGSS 120 MQSLTLSMGS GKGSTSETSA SVDNSNSSIV EAAPRRTLDT FGQRTSIYRG VTRHRWTGRY 180 EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE 240 LEEMKHMTRQ EFVASIRRKS SGFSRGASQY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 300 STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKAILESN TLPIGGGAAK RLKEAQALES 360 SRKREEMIGL GSSFQYGSSS SGPFQAYPLM QQPFDAQPLL TLQNHEISEY SQDSQYQSYI 420 QTQLQLHQQS GSYLHPSSHN SHFYNNYLQS NPVLLHGLMN MGSSSSVMDN NGSSSGSYSG 480 GYLGNGLGMT SNSTSGNARG SAEELGLVKV DYDMPSGTYT GWSGESVQGS NPSVFPMWND

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MNSNNWLSFP LSPTHSSIPA HLQTAQSHHF SLGLVNENID NPFQNQEWNL INTHGNSEVP  60
KVADFLGVGK SENQSEIVSY SELQANDSDY LFSNSSLVPV PNALAAAASN NYELQESGSS  120
MQSLTLSMGS GKGSTSETSA SVDNSNSSIV EAAPRRTLDT FGQRTSIYRG VTRHRWTGRY  180
EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE  240
LEEMKHMTRQ EFVASIRRKS SGFSRGASQY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  300
STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKAILESN TLPIGGGAAK RLKEAQALES  360
SRKREEMIGL GSSFQYGSSS SGPFQAYPLM QQPFDAQPLL TLQNHEISEY SQDSQYQSYI  420
QTQLQLHQQS GSYLHPSSHN SHFYNNYLQS NPVLLHGLMN MGSSSSVMDN NGSSSGSYSG  480
GYLGNGLGMT SNSTSGNARG SAEELGLVKV DYDMPSGTYT GWSGESVQGS NPSVFPMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein