PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027164729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38924.1 Da PI: 7.2171 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_027164729.1 42 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 89 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027164729.1 95 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence |
MDHVKGGGRV CNQQQLQQQQ ISASSTTIAD QEDMMMIMDL RRGPWTVEED FTLINYIAHH 60 GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI 120 AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAAGA 180 DSSTAARATA ATATTTSNSN YHQGNTSMVA DVGSAGQVIL PQASTYGGRV TMNPSRSTSY 240 TPENSSTPAS SDSFTAQFSP VSDLTDCYNY PVKQSNNQDY YQANNQLSYG ETLTSPTGYF 300 NQALDFHLME QNNAWMDGGD VSDNLWNDED AWFFQQQLNS NTFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-89 | MYB family protein |