PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027164408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 445aa MW: 51172.2 Da PI: 6.7241 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.8 | 1.5e-23 | 120 | 216 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++L++a+++++e+ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d XP_027164408.1 120 KWTDTMVRLLVTAVSYIGEEATADYggarrkfanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDM 214 7**************99999997634445667777**********************************************669***99999999 PP trihelix 85 le 86 ++ XP_027164408.1 215 MD 216 98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence |
MEGNLASGSM MPGNGSFGGL DLQGSMRIHH QQPNPFSLHQ HNQSHSRQGS MAHQTIHENF 60 PLTIGSMQEH DHTISLADFN KGDKAKCVSD EDEPSFTEDA ADGHNESSKG KKAFPWQRVK 120 WTDTMVRLLV TAVSYIGEEA TADYGGARRK FANLQKKGKW KSVSKVMAER GHFVSPQQCE 180 DKFNDLNKRY KRLNEILGRG TSCEVVENPA LLDMMDHVSE KAKEEVRKIL SSKHLHYEEM 240 CSYHNGNRLH LPHDPELQRS LRLALRSRED PDENNIRKHP ADDNEEDDQD AELDDREDYE 300 ESHALHAERM PYGISGSSSK RIKHGHGNED GCYGHSFSAL DCSRNLIFPS QSAPTDVNQV 360 MPQGMKANLL QKQWMSHRSL QLEEQKLQIQ AQMLELEKER FKWQKFSRKK DRELERMKIE 420 NERMKLENER MALELKRKEM GIESN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 398 | 410 | KERFKWQKFSRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-151 | Trihelix family protein |