PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027163846.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 522aa    MW: 56570 Da    PI: 9.4458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027163846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157191323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_027163846.1 71 CEICNKGFQRDQNLQLHRRGH 91
                    *******************88 PP

2zf-C2H211.60.00086145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_027163846.1 145 WKCEKCSKKYAVQSDWKAHGKIC 167
                     58*****************8876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNAAK RKRNLPGTPD PDAEVVALSP  60
KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVKKKVY ICPEKTCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHGKICGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARFAPIPSAN LNFRNELFNG GLSSLQPAGN PQFSSSIAGL  240
DPATGQLNLN GQKPRLPLWL DNANTQLNNP IGNHPGNSNA FLASSSTSLP ELVQMTPTNM  300
LGLSSQNQWF NSGGNASSSG LPRVLKEEEE NRGNLSDHIS SLYYNNGQNS SQHETAPAHM  360
SATALLQKAA QMGSTRSNSA IFGTGFGLMS SSLSSLSNFN SLNQSRNELQ NFGQAENLNG  420
LMTSTSQSTI TTNQGDGLLL GNMSSSNNLV GNLRHPSAPP TIMPGSTDRG GSQSKSSGNE  480
AEGGLTRDFL GVGGNESRPF LQQNELVKFA SSMSSAMDFG NQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-109C2H2 family protein