PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027163846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 522aa MW: 56570 Da PI: 9.4458 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 71 | 91 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_027163846.1 71 CEICNKGFQRDQNLQLHRRGH 91 *******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00086 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_027163846.1 145 WKCEKCSKKYAVQSDWKAHGKIC 167 58*****************8876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence |
MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNAAK RKRNLPGTPD PDAEVVALSP 60 KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVKKKVY ICPEKTCVHH 120 DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHGKICGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALAEES ARFAPIPSAN LNFRNELFNG GLSSLQPAGN PQFSSSIAGL 240 DPATGQLNLN GQKPRLPLWL DNANTQLNNP IGNHPGNSNA FLASSSTSLP ELVQMTPTNM 300 LGLSSQNQWF NSGGNASSSG LPRVLKEEEE NRGNLSDHIS SLYYNNGQNS SQHETAPAHM 360 SATALLQKAA QMGSTRSNSA IFGTGFGLMS SSLSSLSNFN SLNQSRNELQ NFGQAENLNG 420 LMTSTSQSTI TTNQGDGLLL GNMSSSNNLV GNLRHPSAPP TIMPGSTDRG GSQSKSSGNE 480 AEGGLTRDFL GVGGNESRPF LQQNELVKFA SSMSSAMDFG NQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-109 | C2H2 family protein |