PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163636.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 480aa MW: 51797.4 Da PI: 7.034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	408	453	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_027163636.1 408 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 453 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MYSPEAISRD ISNNLMFSSN TSSGANSFRN GFLDGDFFKS SKEILNSSSD LFQQPASAAA 60 AAHFQQQNGG LMRYRSAPSA YFASYLDSSK DNNNTTNTNT SGGSNTNGDS SESDSMFSAF 120 LNEPTNESPY HHQRNNPHQH QQQVQPQGSC GAMKMEMNEV ESNPSGMQQN RNGNGFCSSN 180 SSSSTMVSVG YQAAVCAGGG TVVGSYTVPL GVENQGQVRM NSNANGSNLI RQSSSPAGFF 240 SGFDAVGEVG NFRSGNGTNG EASSSTGGLN NRLNFNSGPS SSSRFMPSIA ENGNENGGTG 300 SSEHRQLGNG NETNQGYVSG FLNDTWNDSP FNSLKRNRDG DLKGYSSFNG LENQDGGPRN 360 QTPGLIHHLS LPKTAGEMAA IEKYMQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE 420 RMKKLQELFP NMDKQTNTAD MLDLAVEYIK DLQNQVQTLT ETRAKCICSS KQPQCSHPAV

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MYSPEAISRD ISNNLMFSSN TSSGANSFRN GFLDGDFFKS SKEILNSSSD LFQQPASAAA  60
AAHFQQQNGG LMRYRSAPSA YFASYLDSSK DNNNTTNTNT SGGSNTNGDS SESDSMFSAF  120
LNEPTNESPY HHQRNNPHQH QQQVQPQGSC GAMKMEMNEV ESNPSGMQQN RNGNGFCSSN  180
SSSSTMVSVG YQAAVCAGGG TVVGSYTVPL GVENQGQVRM NSNANGSNLI RQSSSPAGFF  240
SGFDAVGEVG NFRSGNGTNG EASSSTGGLN NRLNFNSGPS SSSRFMPSIA ENGNENGGTG  300
SSEHRQLGNG NETNQGYVSG FLNDTWNDSP FNSLKRNRDG DLKGYSSFNG LENQDGGPRN  360
QTPGLIHHLS LPKTAGEMAA IEKYMQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE  420
RMKKLQELFP NMDKQTNTAD MLDLAVEYIK DLQNQVQTLT ETRAKCICSS KQPQCSHPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-56	bHLH family protein