PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163557.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 266aa MW: 29933.1 Da PI: 8.4448

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng+lKKA+EL vLCdaevaviifs+tgkl+e++s XP_027163557.1 9 KKIENANSRQVTFSKRRNGLLKKAYELGVLCDAEVAVIIFSNTGKLFEFAS 59 68***********************************************86 PP
2	K-box	66.5	9.5e-23	93	172	20	99
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e + Lk+eie+L+ ++ ++lG+dL+ L lkeLq++eqqL+++l++i+++K+++l++q+e+ ++e+++ +en++Lr+k+ XP_027163557.1 93 EEDILKEEIEKLKLKHSQMLGKDLDGLGLKELQEVEQQLNEGLSSIKARKERMLMDQLEQAMMQEQRTLQENQTLRTKIV 172 6688**************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MGRGKIEIKK IENANSRQVT FSKRRNGLLK KAYELGVLCD AEVAVIIFSN TGKLFEFASS 60 SMPQIIARYN KCFEPSDCAT VDHQPEPFQG PKEEDILKEE IEKLKLKHSQ MLGKDLDGLG 120 LKELQEVEQQ LNEGLSSIKA RKERMLMDQL EQAMMQEQRT LQENQTLRTK IVELEHLLPS 180 SGHPAPNYID YYPVEKANMP AKGLTAHPDK ALTSVENEDS DTNLRLGLSS GTFEKRKAPE 240 AADSGAVGAQ KRKRRTRSST YGRQIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	255	KRKAPEAADSGAVGAQKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	5e-62	MIKC_MADS family protein